Identification of salt-induced transcripts by suppression subtractive hybridization and their expression analysis under the combination of salt and elevated CO2 ... View Full Text


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Article Info

DATE

2018-12

AUTHORS

Jenifer Joseph Benjamin, Rani Krishnasamy, Saranya Jothiramshekar, Ganesan Govindan, Rajalakshmi Swaminathan, Ajay Parida

ABSTRACT

Soil salinity is a major abiotic stress that affects global agricultural productivity. Exploring the mechanisms that halophytes employ to thrive and flourish under saline environments is essential to increase the salt tolerance in sensitive crop species. Of the three halophytes used in this study Salicornia brachiata and Suaeda maritima belong to the same family Chenopodiaceae, while Sesuvium portulacastrum, a mangrove-associated halophyte, belongs to the family Aizoaceae. Assuming that halophytes of same family share similar salt tolerance mechanisms, we generated a suppression subtractive hybridization (SSH1) cDNA library from salt-treated leaf tissues of S. brachiata as tester and that of S. maritima as driver to identify salt-responsive genes unique to S. brachiata. To elucidate the difference in salt-tolerance mechanisms, and to identify salt-tolerance mechanisms amongst different families of halophytes, SSH2 library was generated from salt-treated leaf tissue of S. brachiata as tester and that of S. portulacastrum as driver. Totally, 87 and 49 EST clones representing unique genes were obtained from SSH1 and SSH2 libraries, respectively. Examination of the expression patterns of 17 (SSH1) and 15 (SSH2) differentially expressed genes using semi-quantitative RT-PCR confirmed up-regulation of these genes in shoots in response to salt treatment and elevated CO2 condition, but to a different extent. This study has provided insights into the molecular responses of S. brachiata to salt stress and elevated CO2 conditions. More... »

PAGES

202

References to SciGraph publications

  • 2008-08. Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development in GENOME BIOLOGY
  • 2011-10. Expression of SbGSTU (tau class glutathione S-transferase) gene isolated from Salicornia brachiata in tobacco for salt tolerance in MOLECULAR BIOLOGY REPORTS
  • 2010-02. Elevated atmospheric CO2 concentration enhances salinity tolerance in Aster tripolium L. in PLANTA
  • 2011-01. Effects of optimal and supra-optimal salinity stress on antioxidative defence, osmolytes and in vitro growth responses in Sesuvium portulacastrum L. in PLANT CELL, TISSUE AND ORGAN CULTURE (PCTOC)
  • 2003-03. Physiological Impacts of Elevated CO2 Concentration Ranging from Molecular to Whole Plant Responses in PHOTOSYNTHETICA
  • 2012-12. The SbSOS1 gene from the extreme halophyte Salicornia brachiata enhances Na+loading in xylem and confers salt tolerance in transgenic tobacco in BMC PLANT BIOLOGY
  • 2012-03. Changes in photosynthesis, antioxidant enzymes and lipid peroxidation in soybean seedlings exposed to UV-B radiation and/or Cd in PLANT AND SOIL
  • 2013-06. Physiological and Biochemical Responses Reveal the Drought Tolerance Efficacy of the Halophyte Salicornia brachiata in JOURNAL OF PLANT GROWTH REGULATION
  • 1993-11. Mad Bet for Rab in NATURE
  • 1999-02. Improving the thiobarbituric acid-reactive-substances assay for estimating lipid peroxidation in plant tissues containing anthocyanin and other interfering compounds in PLANTA
  • 2012-06. Improved Salinity Tolerance of Arachishypogaea (L.) by the Interaction of Halotolerant Plant-Growth-Promoting Rhizobacteria in JOURNAL OF PLANT GROWTH REGULATION
  • 2013-04-30. Global carbon dioxide levels near worrisome milestone in NATURE
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    http://scigraph.springernature.com/pub.10.1007/s11738-018-2764-y

    DOI

    http://dx.doi.org/10.1007/s11738-018-2764-y

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