Discovery and expression assessment of the AP2-like genes in Hordeum vulgare View Full Text


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Article Info

DATE

2011-01-13

AUTHORS

Jing Zhuang, Anthony Anyia, John Vidmar, Ai-Sheng Xiong, Jian Zhang

ABSTRACT

Barley is a cereal grain derived from annual grass. In modern agriculture, barley plays a significant role as feedstock for feed, malt and food. During its life cycle, as do most plants, barley faces numerous external challenges from the environment. Both biotic and abiotic stresses decrease the growth, yield and cultivation area of barley. Plants have to respond to biotic and abiotic stresses and environmental stimuli during their growth and developmental period. Transcriptional factors play essential roles in the process. In this article, we surveyed and comparatively analyzed AP2-like genes from H. vulgare. A total of 53 AP2-like genes were identified from a database of 480,830 records for H. vulgare-expressed sequence tags. Based on the number of AP2/ERF domains and putative gene functions, the AP2/ERF transcription factors from H. vulgare were classified into four subfamilies and a soloist. cDNA and deduced amino acid sequence, composition, physical and chemical characterization, conserved domain sequences and function domain were investigated, and phylogenetic tree was generated. Using the available EST information as a source of expression profile, those AP2-like genes from barley were detected in ten different tissues. More... »

PAGES

1639-1649

References to SciGraph publications

  • <error retrieving object. in <ERROR RETRIEVING OBJECT
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  • 2004-05. Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barley in PLANT MOLECULAR BIOLOGY
  • 2007-04-06. Stress inducible expression of the DREB1A transcription factor from xeric, Hordeum spontaneum L. in turf and forage grass (Paspalum notatum Flugge) enhances abiotic stress tolerance in TRANSGENIC RESEARCH
  • 2009-05-29. Comparative genomic analysis and expression of the APETALA2-like genes from barley, wheat, and barley-wheat amphiploids in BMC PLANT BIOLOGY
  • 2007-02-07. PlnTFDB: an integrative plant transcription factor database in BMC BIOINFORMATICS
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