Discovery and expression assessment of the AP2-like genes in Hordeum vulgare View Full Text


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Article Info

DATE

2011-01-13

AUTHORS

Jing Zhuang, Anthony Anyia, John Vidmar, Ai-Sheng Xiong, Jian Zhang

ABSTRACT

Barley is a cereal grain derived from annual grass. In modern agriculture, barley plays a significant role as feedstock for feed, malt and food. During its life cycle, as do most plants, barley faces numerous external challenges from the environment. Both biotic and abiotic stresses decrease the growth, yield and cultivation area of barley. Plants have to respond to biotic and abiotic stresses and environmental stimuli during their growth and developmental period. Transcriptional factors play essential roles in the process. In this article, we surveyed and comparatively analyzed AP2-like genes from H. vulgare. A total of 53 AP2-like genes were identified from a database of 480,830 records for H. vulgare-expressed sequence tags. Based on the number of AP2/ERF domains and putative gene functions, the AP2/ERF transcription factors from H. vulgare were classified into four subfamilies and a soloist. cDNA and deduced amino acid sequence, composition, physical and chemical characterization, conserved domain sequences and function domain were investigated, and phylogenetic tree was generated. Using the available EST information as a source of expression profile, those AP2-like genes from barley were detected in ten different tissues. More... »

PAGES

1639-1649

References to SciGraph publications

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  • 2009-01-09. Linkage mapping of putative regulator genes of barley grain development characterized by expression profiling in BMC PLANT BIOLOGY
  • 2009-08-04. The evolutionary significance of ancient genome duplications in NATURE REVIEWS GENETICS
  • 2008-12-10. Isolation and functional characterization of HvDREB1—a gene encoding a dehydration-responsive element binding protein in Hordeum vulgare in JOURNAL OF PLANT RESEARCH
  • 2007-04-06. Stress inducible expression of the DREB1A transcription factor from xeric, Hordeum spontaneum L. in turf and forage grass (Paspalum notatum Flugge) enhances abiotic stress tolerance in TRANSGENIC RESEARCH
  • 2006-08-26. The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis in PLANTA
  • 2006-02-23. Comparative transcriptome analyses of barley and rice under salt stress in THEORETICAL AND APPLIED GENETICS
  • 2006-03-18. An atlas of gene expression from seed to seed through barley development in FUNCTIONAL & INTEGRATIVE GENOMICS
  • 2006-07-21. Role of DREB transcription factors in abiotic and biotic stress tolerance in plants in PLANT CELL REPORTS
  • 2005-11-29. Mapping regulatory genes as candidates for cold and drought stress tolerance in barley in THEORETICAL AND APPLIED GENETICS
  • 2005-01. Transcriptional regulation by abscisic acid in barley (Hordeum vulgare L.) seeds involves autoregulation of the transcription factor HvABI5 in PLANT MOLECULAR BIOLOGY
  • 2004-05. Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barley in PLANT MOLECULAR BIOLOGY
  • 2007-01-21. Identification of a novel gene (Hsdr4) involved in water-stress tolerance in wild barley in PLANT MOLECULAR BIOLOGY
  • 2009-05-29. Comparative genomic analysis and expression of the APETALA2-like genes from barley, wheat, and barley-wheat amphiploids in BMC PLANT BIOLOGY
  • 2007-02-07. PlnTFDB: an integrative plant transcription factor database in BMC BIOINFORMATICS
  • 2007-09-01. Fine mapping of a HvCBF gene cluster at the frost resistance locus Fr-H2 in barley in THEORETICAL AND APPLIED GENETICS
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