Large Deviations for Random Trees and the Branching of RNA Secondary Structures View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2009-01

AUTHORS

Yuri Bakhtin, Christine E. Heitsch

ABSTRACT

We give a Large Deviation Principle (LDP) with explicit rate function for the distribution of vertex degrees in plane trees, a combinatorial model of RNA secondary structures. We calculate the typical degree distributions based on nearest neighbor free energies, and compare our results with the branching configurations found in two sets of large RNA secondary structures. We find substantial agreement overall, with some interesting deviations which merit further study. More... »

PAGES

84-106

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s11538-008-9353-y

DOI

http://dx.doi.org/10.1007/s11538-008-9353-y

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1031192902

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/19083065


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