Ontology type: schema:ScholarlyArticle Open Access: True
2019-11-26
AUTHORSRoss T. Lindsay, Demetris Demetriou, Dominic Manetta-Jones, James A. West, Andrew J. Murray, Julian L. Griffin
ABSTRACTIntroductionRelative oxidation of different metabolic substrates in the heart varies both physiologically and pathologically, in order to meet metabolic demands under different circumstances. 13C labelled substrates have become a key tool for studying substrate use—yet an accurate model is required to analyse the complex data produced as these substrates become incorporated into the Krebs cycle.ObjectivesWe aimed to generate a network model for the quantitative analysis of Krebs cycle intermediate isotopologue distributions measured by mass spectrometry, to determine the 13C labelled proportion of acetyl-CoA entering the Krebs cycle.MethodsA model was generated, and validated ex vivo using isotopic distributions measured from isolated hearts perfused with buffer containing 11 mM glucose in total, with varying fractions of universally labelled with 13C. The model was then employed to determine the relative oxidation of glucose and triacylglycerol by hearts perfused with 11 mM glucose and 0.4 mM equivalent Intralipid (a triacylglycerol mixture).ResultsThe contribution of glucose to Krebs cycle oxidation was measured to be 79.1 ± 0.9%, independent of the fraction of buffer glucose which was U-13C labelled, or of which Krebs cycle intermediate was assessed. In the presence of Intralipid, glucose and triglyceride were determined to contribute 58 ± 3.6% and 35.6 ± 0.8% of acetyl-CoA entering the Krebs cycle, respectively.ConclusionThese results demonstrate the accuracy of a functional model of Krebs cycle metabolism, which can allow quantitative determination of the effects of therapeutics and pathology on cardiac substrate metabolism. More... »
PAGES154
http://scigraph.springernature.com/pub.10.1007/s11306-019-1618-y
DOIhttp://dx.doi.org/10.1007/s11306-019-1618-y
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1122925751
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/31773381
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical and Health Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1102",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Cardiorespiratory Medicine and Haematology",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Acetyl Coenzyme A",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Carbon Isotopes",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Citric Acid Cycle",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Glucose",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Heart",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Male",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Mass Spectrometry",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Mitochondria",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Models, Biological",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Myocardium",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Oxidation-Reduction",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Rats",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Rats, Wistar",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK",
"id": "http://www.grid.ac/institutes/grid.5335.0",
"name": [
"Department of Biochemistry and the Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK",
"Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK"
],
"type": "Organization"
},
"familyName": "Lindsay",
"givenName": "Ross T.",
"id": "sg:person.01260416272.82",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01260416272.82"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Engineering, University of Cambridge, Cambridge, UK",
"id": "http://www.grid.ac/institutes/grid.5335.0",
"name": [
"Department of Engineering, University of Cambridge, Cambridge, UK"
],
"type": "Organization"
},
"familyName": "Demetriou",
"givenName": "Demetris",
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK",
"id": "http://www.grid.ac/institutes/grid.5335.0",
"name": [
"Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK"
],
"type": "Organization"
},
"familyName": "Manetta-Jones",
"givenName": "Dominic",
"id": "sg:person.010005470043.55",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010005470043.55"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biochemistry and the Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK",
"id": "http://www.grid.ac/institutes/grid.5335.0",
"name": [
"Department of Biochemistry and the Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK"
],
"type": "Organization"
},
"familyName": "West",
"givenName": "James A.",
"id": "sg:person.01165153270.99",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01165153270.99"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK",
"id": "http://www.grid.ac/institutes/grid.5335.0",
"name": [
"Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK"
],
"type": "Organization"
},
"familyName": "Murray",
"givenName": "Andrew J.",
"id": "sg:person.01164557225.20",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01164557225.20"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Biochemistry and the Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK",
"id": "http://www.grid.ac/institutes/grid.5335.0",
"name": [
"Department of Biochemistry and the Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK"
],
"type": "Organization"
},
"familyName": "Griffin",
"givenName": "Julian L.",
"id": "sg:person.012451221647.25",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012451221647.25"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/s11064-011-0497-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027787945",
"https://doi.org/10.1007/s11064-011-0497-z"
],
"type": "CreativeWork"
}
],
"datePublished": "2019-11-26",
"datePublishedReg": "2019-11-26",
"description": "IntroductionRelative oxidation of different metabolic substrates in the heart varies both physiologically and pathologically, in order to meet metabolic demands under different circumstances. 13C labelled substrates have become a key tool for studying substrate use\u2014yet an accurate model is required to analyse the complex data produced as these substrates become incorporated into the Krebs cycle.ObjectivesWe aimed to generate a network model for the quantitative analysis of Krebs cycle intermediate isotopologue distributions measured by mass spectrometry, to determine the 13C labelled proportion of acetyl-CoA entering the Krebs cycle.MethodsA model was generated, and validated ex vivo using isotopic distributions measured from isolated hearts perfused with buffer containing 11\u00a0mM glucose in total, with varying fractions of universally labelled with 13C. The model was then employed to determine the relative oxidation of glucose and triacylglycerol by hearts perfused with 11\u00a0mM glucose and 0.4\u00a0mM equivalent Intralipid (a triacylglycerol mixture).ResultsThe contribution of glucose to Krebs cycle oxidation was measured to be 79.1\u2009\u00b1\u20090.9%, independent of the fraction of buffer glucose which was U-13C labelled, or of which Krebs cycle intermediate was assessed. In the presence of Intralipid, glucose and triglyceride were determined to contribute 58\u2009\u00b1\u20093.6% and 35.6\u2009\u00b1\u20090.8% of acetyl-CoA entering the Krebs cycle, respectively.ConclusionThese results demonstrate the accuracy of a functional model of Krebs cycle metabolism, which can allow quantitative determination of the effects of therapeutics and pathology on cardiac substrate metabolism.",
"genre": "article",
"id": "sg:pub.10.1007/s11306-019-1618-y",
"inLanguage": "en",
"isAccessibleForFree": true,
"isFundedItemOf": [
{
"id": "sg:grant.2785012",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.6542332",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.6446046",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.5137521",
"type": "MonetaryGrant"
},
{
"id": "sg:grant.3864363",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1036887",
"issn": [
"1573-3882",
"1573-3890"
],
"name": "Metabolomics",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "12",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "15"
}
],
"keywords": [
"mM glucose",
"presence of Intralipid",
"cardiac substrate metabolism",
"Krebs cycle metabolism",
"effects of therapeutics",
"Krebs cycle",
"ex vivo",
"contribution of glucose",
"ConclusionThese results",
"substrate metabolism",
"different metabolic substrates",
"MethodsA model",
"metabolic substrates",
"metabolic demands",
"Krebs cycle intermediates",
"glucose",
"heart",
"Intralipid",
"Krebs cycle oxidation",
"substrate utilisation",
"metabolism",
"cycle intermediates",
"triglycerides",
"pathology",
"total",
"ObjectivesWe",
"vivo",
"therapeutics",
"substrate use",
"triacylglycerols",
"cycle oxidation",
"metabolites",
"isotopologue distributions",
"mass spectrometry",
"proportion",
"oxidation",
"quantitative determination",
"accurate model",
"isotopic distribution",
"relative oxidation",
"network model",
"quantitative analysis",
"fraction",
"complex data",
"cycle",
"presence",
"effect",
"substrate",
"use",
"utilisation",
"key tool",
"model",
"data",
"spectrometry",
"analysis",
"intermediates",
"functional model",
"circumstances",
"results",
"different circumstances",
"tool",
"distribution",
"buffer",
"determination",
"accuracy",
"contribution",
"order",
"demand"
],
"name": "A model for determining cardiac mitochondrial substrate utilisation using stable 13C-labelled metabolites",
"pagination": "154",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1122925751"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s11306-019-1618-y"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"31773381"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s11306-019-1618-y",
"https://app.dimensions.ai/details/publication/pub.1122925751"
],
"sdDataset": "articles",
"sdDatePublished": "2022-05-20T07:36",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220519/entities/gbq_results/article/article_810.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1007/s11306-019-1618-y"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s11306-019-1618-y'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s11306-019-1618-y'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s11306-019-1618-y'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s11306-019-1618-y'
This table displays all metadata directly associated to this object as RDF triples.
238 TRIPLES
22 PREDICATES
109 URIs
100 LITERALS
21 BLANK NODES