Multi-platform metabolomics analyses of a broad collection of fragrant and non-fragrant rice varieties reveals the high complexity of grain quality ... View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2016-01-23

AUTHORS

R. Mumm, J. A. Hageman, M. N. Calingacion, R. C. H. de Vos, H. H. Jonker, A. Erban, J. Kopka, T. H. Hansen, K. H. Laursen, J. K. Schjoerring, J. L. Ward, M. H. Beale, S. Jongee, A. Rauf, F. Habibi, S. D. Indrasari, S. Sakhan, A. Ramli, M. Romero, R. F. Reinke, K. Ohtsubo, C. Boualaphanh, M. A. Fitzgerald, R. D. Hall

ABSTRACT

The quality of rice in terms not only of its nutritional value but also in terms of its aroma and flavour is becoming increasingly important in modern rice breeding where global targets are focused on both yield stability and grain quality. In the present paper we have exploited advanced, multi-platform metabolomics approaches to determine the biochemical differences in 31 rice varieties from a diverse range of genetic backgrounds and origin. All were grown under the specific local conditions for which they have been bred and all aspects of varietal identification and sample purity have been guaranteed by local experts from each country. Metabolomics analyses using 6 platforms have revealed the extent of biochemical differences (and similarities) between the chosen rice genotypes. Comparison of fragrant rice varieties showed a difference in the metabolic profiles of jasmine and basmati varieties. However with no consistent separation of the germplasm class. Storage of grains had a significant effect on the metabolome of both basmati and jasmine rice varieties but changes were different for the two rice types. This shows how metabolic changes may help prove a causal relationship with developing good quality in basmati rice or incurring quality loss in jasmine rice in aged grains. Such metabolomics approaches are leading to hypotheses on the potential links between grain quality attributes, biochemical composition and genotype in the context of breeding for improvement. With this knowledge we shall establish a stronger, evidence-based foundation upon which to build targeted strategies to support breeders in their quest for improved rice varieties. More... »

PAGES

38

References to SciGraph publications

Journal

TITLE

Metabolomics

ISSUE

2

VOLUME

12

Author Affiliations

  • Centre for BioSystems Genomics, P.O. Box 98, 6700 AB Wageningen, The Netherlands
  • Biometris-Applied Statistics, Wageningen University and Research Centre, Droevendaalsesteeg 1, Wageningen, The Netherlands
  • School of Agriculture and Food Science, University of Queensland, St Lucia, QLD 4072 Australia
  • Netherlands Metabolomics Centre, Einsteinweg 55, 2333 CC Leiden, The Netherlands
  • Max-Planck-Institute of Molecular Plant Physiology (MPIMP), Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
  • Plant and Soil Science Section, Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen (UC), Thorvaldsensvej 40, 1871 Frederiksberg C Copenhagen, Denmark
  • The National Centre for Plant and Microbial Metabolomics, Rothamsted Research, West Common, Harpenden, Herts AL52JQ UK
  • Ubonratchathani Rice Research Centre, Ubon Ratchathani, Thailand
  • Rice Programme, National Agricultural Research Centre, Islamabad, Pakistan
  • Grain Quality Division, Rice Research Institute of Iran (RRII), Km 5 Tehran Rd, 41996-13475 Rasht, Islamic Republic of Iran
  • Indonesian Center for Rice Research (ICRR) BB Padi, Jl. Raya 9, Sukamandi, Subang, 41256 Jawa Barat Indonesia
  • Cambodian Agricultural Research and Development Institute, CARDI Rd, Phnom Penh, Cambodia
  • Pusat Penyelidikan Padi dan Tanaman Industri, MARDI, Seberang Perai Beg Berkunci 203 Pejabat Pos Kepala Batas, 13200 Seberang Perai Pulau, Penang Malaysia
  • Rice Chemistry and Food Science Division, Philippine Rice Research Institute, Maligaya, Science City of Muñoz, 3119 Nueva Ecija Philippines
  • Plant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, DAPO 7777, Metro Manila, Philippines
  • Department of Applied Biological Chemistry, Faculty of Agriculture, Niigata University, Niigata, Japan
  • Rice and Cash Crops Research Centre, National Agriculture and Forestry Research Institute, PDR, Vientiane, Lao
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s11306-015-0925-1

    DOI

    http://dx.doi.org/10.1007/s11306-015-0925-1

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1016892332

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/26848289


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