Metabolic analyses of interspecific tomato recombinant inbred lines for fruit quality improvement View Full Text


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Article Info

DATE

2015-04-01

AUTHORS

Mariana G. López, María I. Zanor, Guillermo R. Pratta, Georgina Stegmayer, Silvana B. Boggio, Mariana Conte, Luisa Bermúdez, Carla Coluccio Leskow, Gustavo R. Rodríguez, Liliana A. Picardi, Roxana Zorzoli, Alisdair R. Fernie, Diego Milone, Ramón Asís, Estela M. Valle, Fernando Carrari

ABSTRACT

Elucidating the determinants of tomato nutritional value and fruit quality to introduce improved varieties on the international market represents a major challenge for crop biotechnology. Different strategies can be undertaken to exploit the natural variability of Solanum to re-incorporate lost allelic diversity into commercial varieties. One of them is the characterization of selected germplasm for breeding programs. To achieve this goal, 18 RILs (S. lycopersicum × S. pimpinellifolium) were comprehensively phenotyped for fruit polar metabolites and quality associated traits. Metabolites were quantified by GC–MS and 1H NMR. Integrative analyses by neuronal clustering and network construction revealed that fruit properties are strongly associated with the metabolites aspartate, serine, glutamate and 2-oxoglutarate. Shelf life and firmness appeared to be linked to malate content. By a comparative analysis of the whole data set, ten RILs presented higher number of traits with positive effect than the S. lycopersicum × S. pimpinellifolium hybrid. Thus, these lines can be proposed as promising candidates for breeding programs aimed to improve fruit quality. More... »

PAGES

1416-1431

References to SciGraph publications

  • 2014-01-29. Metabolic map of mature maize kernels in METABOLOMICS
  • 2012-05-30. The tomato genome sequence provides insights into fleshy fruit evolution in NATURE
  • 2000-05. Advanced backcross QTL analysis of a Lycopersicon esculentum ×Lycopersicon parviflorum cross in THEORETICAL AND APPLIED GENETICS
  • 1990-10. RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon in THEORETICAL AND APPLIED GENETICS
  • 2012-06-02. Metabolomics and molecular marker analysis to explore pepper (Capsicum sp.) biodiversity in METABOLOMICS
  • 2004-04-25. Engineering plants with increased levels of the antioxidant chlorogenic acid in NATURE BIOTECHNOLOGY
  • 2004-08. Discovery of single nucleotide polymorphisms in Lycopersicon esculentum by computer aided analysis of expressed sequence tags in MOLECULAR BREEDING
  • 2006-06-27. Gas chromatography mass spectrometry–based metabolite profiling in plants in NATURE PROTOCOLS
  • 2012-01-15. Genomic and metabolic prediction of complex heterotic traits in hybrid maize in NATURE GENETICS
  • 2011-08-27. Phenotypic and molecular characterization of selected tomato recombinant inbred lines derived from the cross Solanum lycopersicum × S. pimpinellifolium in JOURNAL OF GENETICS
  • 1998-11. RFLP mapping of QTLs conferring salt tolerance during germination in an interspecific cross of tomato in THEORETICAL AND APPLIED GENETICS
  • 2014-05-27. Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics in SCIENTIFIC REPORTS
  • 2014-10-12. Genomic analyses provide insights into the history of tomato breeding in NATURE GENETICS
  • 2005-02. Functional cartography of complex metabolic networks in NATURE
  • 1997-10. QTL analysis of an advanced backcross of Lycopersicon peruvianum to the cultivated tomato and comparisons with QTLs found in other wild species in THEORETICAL AND APPLIED GENETICS
  • 1988-10. Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms in NATURE
  • 1993-03. Genetic variability in Lycopersicon species and their genetic relationships in THEORETICAL AND APPLIED GENETICS
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    URI

    http://scigraph.springernature.com/pub.10.1007/s11306-015-0798-3

    DOI

    http://dx.doi.org/10.1007/s11306-015-0798-3

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