High genetic diversity of in situ and ex situ populations of Madagascan coffee species: further implications for the management of ... View Full Text


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Article Info

DATE

2013-10

AUTHORS

Domohina N. Andrianasolo, Aaron P. Davis, Norosoa J. Razafinarivo, Serge Hamon, Jean-Jacques Rakotomalala, Sylvie-Annabel Sabatier, Perla Hamon

ABSTRACT

The genetic diversity of endemic Madagascan Coffea species has not received any considerable attention, despite the high extinction threat facing most of the species on the island. In order to address this shortfall, we assessed and compared the genetic diversity and allelic richness of ex situ and in situ populations for four selected species, and 18 ex situ populations maintained at the Kianjavato Coffee Research Station. We also investigated the possibility of in situ and ex situ hybridization events for Madagascan coffee, both within and between species. For these purposes, we used 18 nuclear microsatellite markers, on a total of 37 Coffea populations (4 in situ and 33 ex situ) representing a total of 398 genotypes (96 in situ and 302 ex situ) for 23 species. Our study showed (1) strong differentiation between Madagascan Coffea species; (2) good differentiation between all the populations studied, including those from the same locality (even when the area of the locality was restricted); (3) good evidence for both in situ and ex situ hybridization, although in situ hybridization appeared to be limited; (4) much higher genetic diversity within in situ collections compared to ex situ collections; and (5) that, despite limitations, the Kianjavato Coffee Research Station collection is an extremely valuable resource of Madagascan coffee germplasm. Recommendations for in situ and ex situ germplasm conservation are discussed. More... »

PAGES

1295-1312

References to SciGraph publications

  • 2013-02. The study of genetic diversity patterns of Coffea commersoniana, an endangered coffee species from Madagascar: a model for conservation of other littoral forest species in TREE GENETICS & GENOMES
  • 2009-12. MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceaefamily in BMC PLANT BIOLOGY
  • 2010-07. High resolution synteny maps allowing direct comparisons between the coffee and tomato genomes in TREE GENETICS & GENOMES
  • 1996-04. Genetic evidence for repression of somatic P element movements in Drosophila melanogaster consistent with a role for the KP element in HEREDITY
  • 2008-12. Development of new genomic microsatellite markers from robusta coffee (Coffea canephoraPierre ex A. Froehner) showing broad cross-species transferability and utility in genetic studies in BMC PLANT BIOLOGY
  • 1998-12. Effects of quantitative and qualitative principal component score strategies on the structure of coffee, rubber tree, rice and sorghum core collections in GENETICS SELECTION EVOLUTION
  • 2011-06. Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae) in MOLECULAR GENETICS AND GENOMICS
  • 2013-03. An assessment of the genetic integrity of ex situ germplasm collections of three endangered species of Coffea from Madagascar: implications for the management of field germplasm collections in GENETIC RESOURCES AND CROP EVOLUTION
  • 1998-12. Complementary conservation strategies for the genus Coffea: A case study of Mascarene Coffea species in GENETIC RESOURCES AND CROP EVOLUTION
  • 2007-09. Genetic diversity and structure of Ethiopian, Yemen and Brazilian Coffea arabica L. accessions using microsatellites markers in GENETIC RESOURCES AND CROP EVOLUTION
  • 2009-12. Current genetic differentiation of Coffea canephoraPierre ex A. Froehn in the Guineo-Congolian African zone: cumulative impact of ancient climatic changes and recent human activities in BMC EVOLUTIONARY BIOLOGY
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