Ontology type: schema:ScholarlyArticle
2011-12-03
AUTHORSEric Mandrou, Paulo Ricardo Gherardi Hein, Emilie Villar, Philippe Vigneron, Christophe Plomion, Jean-Marc Gion
ABSTRACTLignin content and composition are considered as mandatory traits of eucalyptus breeding programs, especially for pulp, paper, and bioenergy production. In this article, we used 33 Eucalyptus urophylla full-sib families of an 8 × 8 factorial design to provide estimates of genetic parameters for lignin- and growth-related traits. Secondly, from the sequencing of the 16 unrelated founders, we described the nucleotide and haplotype variability of cinnamoyl-CoA reductase (CCR), a candidate gene for lignin-related traits encoding the cinnamoyl-CoA reductase. Finally, we tested the association between CCR polymorphisms and trait variation using a mixed linear model. A high value of narrow sense heritability was obtained for lignin content (h² = 0.85) and S/G ratio (h² = 0.62) indicating that these traits are under strong genetic control. High levels of nucleotide (θπ = 0.0131) and haplotype (Hd = 0.958) diversity were detected for CCR. From an initial set of 152 biallelic single nucleotide polymorphisms (SNPs), a subset of 65 nonredundant loci was selected. Three intronic SNPs were found to be associated to the variation of S/G ratio after multiple testing correction. In the line of what has been obtained in forest trees, these SNPs explained between 2.45% and 2.87% of the genetic variance of the trait. This study demonstrates the interest of the candidate gene approach for quantitative trait nucleotide detection in Eucalyptus and paves the way to gene assisted selection of lignin composition in E. urophylla. More... »
PAGES353-364
http://scigraph.springernature.com/pub.10.1007/s11295-011-0446-7
DOIhttp://dx.doi.org/10.1007/s11295-011-0446-7
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1039097214
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "INRA, UMR 1202 BIOGECO, 69 Route d\u2019Arcachon, 33612, Cestas Pierroton, France",
"id": "http://www.grid.ac/institutes/None",
"name": [
"Centre de Recherche Vallourec, CEV, Route de Leval BP 17, Aulnoye Aymeries, France",
"CIRAD, UMR AGAP, Equipe G\u00e9n\u00e9tique et Am\u00e9lioration des Esp\u00e8ces P\u00e9rennes: Mod\u00e8les For\u00eat & Palmier, Campus International de Baillarguet TA A-39/C, Montpellier cedex 5, France",
"INRA, UMR 1202 BIOGECO, 69 Route d\u2019Arcachon, 33612, Cestas Pierroton, France"
],
"type": "Organization"
},
"familyName": "Mandrou",
"givenName": "Eric",
"id": "sg:person.0743150654.55",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0743150654.55"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "CIRAD, UPR40 Production and Processing of Tropical Woods, 73 rue J-F Breton TA B\u00ad40/16, Montpellier, France",
"id": "http://www.grid.ac/institutes/grid.8183.2",
"name": [
"CIRAD, UPR40 Production and Processing of Tropical Woods, 73 rue J-F Breton TA B\u00ad40/16, Montpellier, France"
],
"type": "Organization"
},
"familyName": "Hein",
"givenName": "Paulo Ricardo Gherardi",
"id": "sg:person.07452660477.58",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07452660477.58"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "CRDPI, BP 1291, Pointe-Noire, R\u00e9publique du Congo",
"id": "http://www.grid.ac/institutes/None",
"name": [
"CIRAD, UMR AGAP, Equipe G\u00e9n\u00e9tique et Am\u00e9lioration des Esp\u00e8ces P\u00e9rennes: Mod\u00e8les For\u00eat & Palmier, Campus International de Baillarguet TA A-39/C, Montpellier cedex 5, France",
"INRA, UMR 1202 BIOGECO, 69 Route d\u2019Arcachon, 33612, Cestas Pierroton, France",
"CRDPI, BP 1291, Pointe-Noire, R\u00e9publique du Congo"
],
"type": "Organization"
},
"familyName": "Villar",
"givenName": "Emilie",
"id": "sg:person.01161630126.09",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01161630126.09"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "CRDPI, BP 1291, Pointe-Noire, R\u00e9publique du Congo",
"id": "http://www.grid.ac/institutes/None",
"name": [
"CRDPI, BP 1291, Pointe-Noire, R\u00e9publique du Congo"
],
"type": "Organization"
},
"familyName": "Vigneron",
"givenName": "Philippe",
"id": "sg:person.0625455434.27",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0625455434.27"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Universit\u00e9 Bordeaux 1, 69 Route d\u2019Arcachon, Cestas Pierroton, France",
"id": "http://www.grid.ac/institutes/grid.412041.2",
"name": [
"INRA, UMR 1202 BIOGECO, 69 Route d\u2019Arcachon, 33612, Cestas Pierroton, France",
"Universit\u00e9 Bordeaux 1, 69 Route d\u2019Arcachon, Cestas Pierroton, France"
],
"type": "Organization"
},
"familyName": "Plomion",
"givenName": "Christophe",
"id": "sg:person.0666701026.90",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0666701026.90"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "INRA, UMR 1202 BIOGECO, 69 Route d\u2019Arcachon, 33612, Cestas Pierroton, France",
"id": "http://www.grid.ac/institutes/None",
"name": [
"CIRAD, UMR AGAP, Equipe G\u00e9n\u00e9tique et Am\u00e9lioration des Esp\u00e8ces P\u00e9rennes: Mod\u00e8les For\u00eat & Palmier, Campus International de Baillarguet TA A-39/C, Montpellier cedex 5, France",
"INRA, UMR 1202 BIOGECO, 69 Route d\u2019Arcachon, 33612, Cestas Pierroton, France"
],
"type": "Organization"
},
"familyName": "Gion",
"givenName": "Jean-Marc",
"id": "sg:person.01015124413.32",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01015124413.32"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1023/a:1026006828721",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012933175",
"https://doi.org/10.1023/a:1026006828721"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-10-452",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046303245",
"https://doi.org/10.1186/1471-2164-10-452"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng1702",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035781360",
"https://doi.org/10.1038/ng1702"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1020362705497",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019717064",
"https://doi.org/10.1023/a:1020362705497"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11295-009-0222-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006308641",
"https://doi.org/10.1007/s11295-009-0222-0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s001220051287",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016943284",
"https://doi.org/10.1007/s001220051287"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11295-007-0128-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046026644",
"https://doi.org/10.1007/s11295-007-0128-7"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/11758",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029293111",
"https://doi.org/10.1038/11758"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2229-9-36",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026146588",
"https://doi.org/10.1186/1471-2229-9-36"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11295-009-0250-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014931885",
"https://doi.org/10.1007/s11295-009-0250-9"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00122-004-1699-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003377219",
"https://doi.org/10.1007/s00122-004-1699-4"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00023605",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050155304",
"https://doi.org/10.1007/bf00023605"
],
"type": "CreativeWork"
}
],
"datePublished": "2011-12-03",
"datePublishedReg": "2011-12-03",
"description": "Lignin content and composition are considered as mandatory traits of eucalyptus breeding programs, especially for pulp, paper, and bioenergy production. In this article, we used 33 Eucalyptus urophylla full-sib families of an 8\u2009\u00d7\u20098 factorial design to provide estimates of genetic parameters for lignin- and growth-related traits. Secondly, from the sequencing of the 16 unrelated founders, we described the nucleotide and haplotype variability of cinnamoyl-CoA reductase (CCR), a candidate gene for lignin-related traits encoding the cinnamoyl-CoA reductase. Finally, we tested the association between CCR polymorphisms and trait variation using a mixed linear model. A high value of narrow sense heritability was obtained for lignin content (h\u00b2\u2009=\u20090.85) and S/G ratio (h\u00b2\u2009=\u20090.62) indicating that these traits are under strong genetic control. High levels of nucleotide (\u03b8\u03c0\u2009=\u20090.0131) and haplotype (Hd\u2009=\u20090.958) diversity were detected for CCR. From an initial set of 152 biallelic single nucleotide polymorphisms (SNPs), a subset of 65 nonredundant loci was selected. Three intronic SNPs were found to be associated to the variation of S/G ratio after multiple testing correction. In the line of what has been obtained in forest trees, these SNPs explained between 2.45% and 2.87% of the genetic variance of the trait. This study demonstrates the interest of the candidate gene approach for quantitative trait nucleotide detection in Eucalyptus and paves the way to gene assisted selection of lignin composition in E. urophylla.",
"genre": "article",
"id": "sg:pub.10.1007/s11295-011-0446-7",
"inLanguage": "en",
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1036007",
"issn": [
"1614-2942",
"1614-2950"
],
"name": "Tree Genetics & Genomes",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "2",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "8"
}
],
"keywords": [
"cinnamoyl-CoA reductase",
"single nucleotide polymorphisms",
"candidate genes",
"Eucalyptus breeding programs",
"growth-related traits",
"narrow-sense heritability",
"biallelic single nucleotide polymorphisms",
"lignin content",
"lignin composition",
"candidate gene approach",
"full-sib families",
"strong genetic control",
"intronic single nucleotide polymorphism",
"mixed linear model",
"breeding programs",
"forest trees",
"haplotype variability",
"sense heritability",
"bioenergy production",
"genetic variance",
"genetic control",
"gene approach",
"genetic parameters",
"CCR polymorphisms",
"unrelated founders",
"traits",
"multiple testing correction",
"nucleotide polymorphisms",
"Eucalyptus",
"reductase",
"genes",
"nucleotides",
"nucleotide detection",
"polymorphism",
"higher values",
"factorial design",
"urophylla",
"loci",
"heritability",
"sequencing",
"diversity",
"trees",
"content",
"high levels",
"production",
"linear model",
"composition",
"family",
"variation",
"selection",
"lignin",
"variability",
"lines",
"pulp",
"program",
"control",
"subset",
"variance",
"estimates",
"levels",
"founders",
"association",
"ratio",
"values",
"study",
"set",
"interest",
"initial set",
"parameters",
"approach",
"detection",
"design",
"way",
"model",
"article",
"paper",
"correction"
],
"name": "A candidate gene for lignin composition in Eucalyptus: cinnamoyl-CoA reductase (CCR)",
"pagination": "353-364",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1039097214"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s11295-011-0446-7"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s11295-011-0446-7",
"https://app.dimensions.ai/details/publication/pub.1039097214"
],
"sdDataset": "articles",
"sdDatePublished": "2022-06-01T22:08",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220601/entities/gbq_results/article/article_547.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1007/s11295-011-0446-7"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s11295-011-0446-7'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s11295-011-0446-7'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s11295-011-0446-7'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s11295-011-0446-7'
This table displays all metadata directly associated to this object as RDF triples.
229 TRIPLES
22 PREDICATES
113 URIs
93 LITERALS
6 BLANK NODES