Response of Acidithiobacillus ferrooxidans ATCC 23270 gene expression to acid stress View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2008-03-23

AUTHORS

Jing Chao, Wei Wang, Shuiming Xiao, Xueduan Liu

ABSTRACT

The response of Acidithiobacillus ferrooxidans ATCC 23270 to variations in extracellular pH was investigated based on some gene expression profiling. Real-time PCR analysis revealed that cells elicited both general and specific transcriptional responses when challenged with environmental acid (pH 1.3) or base (pH 2.3) conditions over a 6-h period. These responses included the differential expression of genes functionally linked to cell membrane structure, transcriptional regulation and signal transduction. Response to acid stress included the elevated expression of genes encoding the two component response regulator OmpR, the global regulator Fur, and the RNA polymerase sigma-38 factor (rpoS) and so on. Collectively, these results suggest that Acidithiobacillus ferrooxidans modulates multiple cell envelope components, transcription regulators and as part of its response to changing external pH conditions. More... »

PAGES

2103-2109

References to SciGraph publications

  • 1996-10. Lactococcus lactis and stress in ANTONIE VAN LEEUWENHOEK
  • 2002-04-09. The acid stress response of the cyanobacterium Synechocystis sp. strain PCC 6308 in ARCHIVES OF MICROBIOLOGY
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s11274-008-9715-5

    DOI

    http://dx.doi.org/10.1007/s11274-008-9715-5

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1038944348


    Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
    Incoming Citations Browse incoming citations for this publication using opencitations.net

    JSON-LD is the canonical representation for SciGraph data.

    TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

    [
      {
        "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
        "about": [
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biological Sciences", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Biochemistry and Cell Biology", 
            "type": "DefinedTerm"
          }, 
          {
            "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
            "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
            "name": "Genetics", 
            "type": "DefinedTerm"
          }
        ], 
        "author": [
          {
            "affiliation": {
              "alternateName": "School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, Hunan, People\u2019s Republic of China", 
              "id": "http://www.grid.ac/institutes/grid.216417.7", 
              "name": [
                "School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, Hunan, People\u2019s Republic of China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Chao", 
            "givenName": "Jing", 
            "id": "sg:person.0617177611.18", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0617177611.18"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, Hunan, People\u2019s Republic of China", 
              "id": "http://www.grid.ac/institutes/grid.216417.7", 
              "name": [
                "School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, Hunan, People\u2019s Republic of China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Wang", 
            "givenName": "Wei", 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, Hunan, People\u2019s Republic of China", 
              "id": "http://www.grid.ac/institutes/grid.216417.7", 
              "name": [
                "School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, Hunan, People\u2019s Republic of China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Xiao", 
            "givenName": "Shuiming", 
            "id": "sg:person.01342603711.71", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01342603711.71"
            ], 
            "type": "Person"
          }, 
          {
            "affiliation": {
              "alternateName": "School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, Hunan, People\u2019s Republic of China", 
              "id": "http://www.grid.ac/institutes/grid.216417.7", 
              "name": [
                "School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, Hunan, People\u2019s Republic of China"
              ], 
              "type": "Organization"
            }, 
            "familyName": "Liu", 
            "givenName": "Xueduan", 
            "id": "sg:person.0636445467.35", 
            "sameAs": [
              "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0636445467.35"
            ], 
            "type": "Person"
          }
        ], 
        "citation": [
          {
            "id": "sg:pub.10.1007/s00203-002-0419-1", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1027310394", 
              "https://doi.org/10.1007/s00203-002-0419-1"
            ], 
            "type": "CreativeWork"
          }, 
          {
            "id": "sg:pub.10.1007/bf00395935", 
            "sameAs": [
              "https://app.dimensions.ai/details/publication/pub.1025003336", 
              "https://doi.org/10.1007/bf00395935"
            ], 
            "type": "CreativeWork"
          }
        ], 
        "datePublished": "2008-03-23", 
        "datePublishedReg": "2008-03-23", 
        "description": "The response of Acidithiobacillus ferrooxidans ATCC 23270 to variations in extracellular pH was investigated based on some gene expression profiling. Real-time PCR analysis revealed that cells elicited both general and specific transcriptional responses when challenged with environmental acid (pH\u00a01.3) or base (pH\u00a02.3) conditions over a 6-h period. These responses included the differential expression of genes functionally linked to cell membrane structure, transcriptional regulation and signal transduction. Response to acid stress included the elevated expression of genes encoding the two component response regulator OmpR, the global regulator Fur, and the RNA polymerase sigma-38 factor (rpoS) and so on. Collectively, these results suggest that Acidithiobacillus ferrooxidans modulates multiple cell envelope components, transcription regulators and as part of its response to changing external pH conditions.", 
        "genre": "article", 
        "id": "sg:pub.10.1007/s11274-008-9715-5", 
        "isAccessibleForFree": false, 
        "isFundedItemOf": [
          {
            "id": "sg:grant.4989196", 
            "type": "MonetaryGrant"
          }, 
          {
            "id": "sg:grant.4935078", 
            "type": "MonetaryGrant"
          }
        ], 
        "isPartOf": [
          {
            "id": "sg:journal.1096771", 
            "issn": [
              "0959-3993", 
              "1573-0972"
            ], 
            "name": "World Journal of Microbiology and Biotechnology", 
            "publisher": "Springer Nature", 
            "type": "Periodical"
          }, 
          {
            "issueNumber": "10", 
            "type": "PublicationIssue"
          }, 
          {
            "type": "PublicationVolume", 
            "volumeNumber": "24"
          }
        ], 
        "keywords": [
          "global regulator Fur", 
          "response regulator OmpR", 
          "specific transcriptional responses", 
          "Acidithiobacillus ferrooxidans ATCC 23270", 
          "real-time PCR analysis", 
          "gene expression profiling", 
          "cell envelope components", 
          "cell membrane structure", 
          "regulator Fur", 
          "transcriptional regulation", 
          "transcription regulators", 
          "transcriptional response", 
          "signal transduction", 
          "ATCC 23270", 
          "expression profiling", 
          "gene expression", 
          "differential expression", 
          "PCR analysis", 
          "elevated expression", 
          "environmental acid", 
          "membrane structure", 
          "genes", 
          "envelope components", 
          "Acidithiobacillus ferrooxidans", 
          "expression", 
          "OmpR", 
          "transduction", 
          "regulator", 
          "profiling", 
          "regulation", 
          "fur", 
          "stress", 
          "response", 
          "cells", 
          "ferrooxidans", 
          "acid", 
          "variation", 
          "conditions", 
          "components", 
          "structure", 
          "factors", 
          "analysis", 
          "part", 
          "results", 
          "period", 
          "base conditions"
        ], 
        "name": "Response of Acidithiobacillus ferrooxidans ATCC 23270 gene expression to acid stress", 
        "pagination": "2103-2109", 
        "productId": [
          {
            "name": "dimensions_id", 
            "type": "PropertyValue", 
            "value": [
              "pub.1038944348"
            ]
          }, 
          {
            "name": "doi", 
            "type": "PropertyValue", 
            "value": [
              "10.1007/s11274-008-9715-5"
            ]
          }
        ], 
        "sameAs": [
          "https://doi.org/10.1007/s11274-008-9715-5", 
          "https://app.dimensions.ai/details/publication/pub.1038944348"
        ], 
        "sdDataset": "articles", 
        "sdDatePublished": "2022-10-01T06:34", 
        "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
        "sdPublisher": {
          "name": "Springer Nature - SN SciGraph project", 
          "type": "Organization"
        }, 
        "sdSource": "s3://com-springernature-scigraph/baseset/20221001/entities/gbq_results/article/article_461.jsonl", 
        "type": "ScholarlyArticle", 
        "url": "https://doi.org/10.1007/s11274-008-9715-5"
      }
    ]
     

    Download the RDF metadata as:  json-ld nt turtle xml License info

    HOW TO GET THIS DATA PROGRAMMATICALLY:

    JSON-LD is a popular format for linked data which is fully compatible with JSON.

    curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s11274-008-9715-5'

    N-Triples is a line-based linked data format ideal for batch operations.

    curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s11274-008-9715-5'

    Turtle is a human-readable linked data format.

    curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s11274-008-9715-5'

    RDF/XML is a standard XML format for linked data.

    curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s11274-008-9715-5'


     

    This table displays all metadata directly associated to this object as RDF triples.

    139 TRIPLES      21 PREDICATES      73 URIs      62 LITERALS      6 BLANK NODES

    Subject Predicate Object
    1 sg:pub.10.1007/s11274-008-9715-5 schema:about anzsrc-for:06
    2 anzsrc-for:0601
    3 anzsrc-for:0604
    4 schema:author N8adbeb11871c41658aa4520b68505e12
    5 schema:citation sg:pub.10.1007/bf00395935
    6 sg:pub.10.1007/s00203-002-0419-1
    7 schema:datePublished 2008-03-23
    8 schema:datePublishedReg 2008-03-23
    9 schema:description The response of Acidithiobacillus ferrooxidans ATCC 23270 to variations in extracellular pH was investigated based on some gene expression profiling. Real-time PCR analysis revealed that cells elicited both general and specific transcriptional responses when challenged with environmental acid (pH 1.3) or base (pH 2.3) conditions over a 6-h period. These responses included the differential expression of genes functionally linked to cell membrane structure, transcriptional regulation and signal transduction. Response to acid stress included the elevated expression of genes encoding the two component response regulator OmpR, the global regulator Fur, and the RNA polymerase sigma-38 factor (rpoS) and so on. Collectively, these results suggest that Acidithiobacillus ferrooxidans modulates multiple cell envelope components, transcription regulators and as part of its response to changing external pH conditions.
    10 schema:genre article
    11 schema:isAccessibleForFree false
    12 schema:isPartOf N53d9fcaa6a9a47eeb228aa541305a70d
    13 N62f60a345187475e92b8ecbcdfab2a1f
    14 sg:journal.1096771
    15 schema:keywords ATCC 23270
    16 Acidithiobacillus ferrooxidans
    17 Acidithiobacillus ferrooxidans ATCC 23270
    18 OmpR
    19 PCR analysis
    20 acid
    21 analysis
    22 base conditions
    23 cell envelope components
    24 cell membrane structure
    25 cells
    26 components
    27 conditions
    28 differential expression
    29 elevated expression
    30 envelope components
    31 environmental acid
    32 expression
    33 expression profiling
    34 factors
    35 ferrooxidans
    36 fur
    37 gene expression
    38 gene expression profiling
    39 genes
    40 global regulator Fur
    41 membrane structure
    42 part
    43 period
    44 profiling
    45 real-time PCR analysis
    46 regulation
    47 regulator
    48 regulator Fur
    49 response
    50 response regulator OmpR
    51 results
    52 signal transduction
    53 specific transcriptional responses
    54 stress
    55 structure
    56 transcription regulators
    57 transcriptional regulation
    58 transcriptional response
    59 transduction
    60 variation
    61 schema:name Response of Acidithiobacillus ferrooxidans ATCC 23270 gene expression to acid stress
    62 schema:pagination 2103-2109
    63 schema:productId N0addc8eb7f9a4f08be902fc78ac71e83
    64 N0fc0bb5c7301478baf7a12366f563ded
    65 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038944348
    66 https://doi.org/10.1007/s11274-008-9715-5
    67 schema:sdDatePublished 2022-10-01T06:34
    68 schema:sdLicense https://scigraph.springernature.com/explorer/license/
    69 schema:sdPublisher Ndab5a3e6e2734215aa5bc3e40e248776
    70 schema:url https://doi.org/10.1007/s11274-008-9715-5
    71 sgo:license sg:explorer/license/
    72 sgo:sdDataset articles
    73 rdf:type schema:ScholarlyArticle
    74 N00e1681af4174049a082ea677eff9974 schema:affiliation grid-institutes:grid.216417.7
    75 schema:familyName Wang
    76 schema:givenName Wei
    77 rdf:type schema:Person
    78 N0addc8eb7f9a4f08be902fc78ac71e83 schema:name dimensions_id
    79 schema:value pub.1038944348
    80 rdf:type schema:PropertyValue
    81 N0fc0bb5c7301478baf7a12366f563ded schema:name doi
    82 schema:value 10.1007/s11274-008-9715-5
    83 rdf:type schema:PropertyValue
    84 N53d9fcaa6a9a47eeb228aa541305a70d schema:volumeNumber 24
    85 rdf:type schema:PublicationVolume
    86 N62f60a345187475e92b8ecbcdfab2a1f schema:issueNumber 10
    87 rdf:type schema:PublicationIssue
    88 N67736978e3ce44079af4c6d6a053894d rdf:first N00e1681af4174049a082ea677eff9974
    89 rdf:rest N8881a0806b3447b79f79823f0a305483
    90 N8881a0806b3447b79f79823f0a305483 rdf:first sg:person.01342603711.71
    91 rdf:rest Nfa792d99fcb84129b8d4064f341841d1
    92 N8adbeb11871c41658aa4520b68505e12 rdf:first sg:person.0617177611.18
    93 rdf:rest N67736978e3ce44079af4c6d6a053894d
    94 Ndab5a3e6e2734215aa5bc3e40e248776 schema:name Springer Nature - SN SciGraph project
    95 rdf:type schema:Organization
    96 Nfa792d99fcb84129b8d4064f341841d1 rdf:first sg:person.0636445467.35
    97 rdf:rest rdf:nil
    98 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
    99 schema:name Biological Sciences
    100 rdf:type schema:DefinedTerm
    101 anzsrc-for:0601 schema:inDefinedTermSet anzsrc-for:
    102 schema:name Biochemistry and Cell Biology
    103 rdf:type schema:DefinedTerm
    104 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
    105 schema:name Genetics
    106 rdf:type schema:DefinedTerm
    107 sg:grant.4935078 http://pending.schema.org/fundedItem sg:pub.10.1007/s11274-008-9715-5
    108 rdf:type schema:MonetaryGrant
    109 sg:grant.4989196 http://pending.schema.org/fundedItem sg:pub.10.1007/s11274-008-9715-5
    110 rdf:type schema:MonetaryGrant
    111 sg:journal.1096771 schema:issn 0959-3993
    112 1573-0972
    113 schema:name World Journal of Microbiology and Biotechnology
    114 schema:publisher Springer Nature
    115 rdf:type schema:Periodical
    116 sg:person.01342603711.71 schema:affiliation grid-institutes:grid.216417.7
    117 schema:familyName Xiao
    118 schema:givenName Shuiming
    119 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01342603711.71
    120 rdf:type schema:Person
    121 sg:person.0617177611.18 schema:affiliation grid-institutes:grid.216417.7
    122 schema:familyName Chao
    123 schema:givenName Jing
    124 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0617177611.18
    125 rdf:type schema:Person
    126 sg:person.0636445467.35 schema:affiliation grid-institutes:grid.216417.7
    127 schema:familyName Liu
    128 schema:givenName Xueduan
    129 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0636445467.35
    130 rdf:type schema:Person
    131 sg:pub.10.1007/bf00395935 schema:sameAs https://app.dimensions.ai/details/publication/pub.1025003336
    132 https://doi.org/10.1007/bf00395935
    133 rdf:type schema:CreativeWork
    134 sg:pub.10.1007/s00203-002-0419-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027310394
    135 https://doi.org/10.1007/s00203-002-0419-1
    136 rdf:type schema:CreativeWork
    137 grid-institutes:grid.216417.7 schema:alternateName School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, Hunan, People’s Republic of China
    138 schema:name School of Minerals Processing and Bioengineering, Central South University, 410083, Changsha, Hunan, People’s Republic of China
    139 rdf:type schema:Organization
     




    Preview window. Press ESC to close (or click here)


    ...