Genomic Configuration of the Autotetraploid Oat Species Avena macrostachya Inferred from Comparative Analysis of ITS1 and ITS2 Sequences: on the ... View Full Text


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Article Info

DATE

2005-05

AUTHORS

A. V. Rodionov, N. B. Tyupa, E. S. Kim, E. M. Machs, I. G. Loskutov

ABSTRACT

To examine the genomic configuration of Avena macrostachya, internal transcribed spacers, ITS1 and ITS2, as well as nuclear 5.8S rRNA genes from three oat species with AsAs karyotype (A. wiestii, A. hirtula, and A. atlantica), and those from A. longiglumis (AlAl), A. canariensis (AcAc), A. ventricosa (CvCv), A. pilosa, and A. clauda (CpCp) were sequenced. All species of the genus Avena examined represented a monophyletic group (bootstrap index = 98), within which two branches, i.e., species with A- and C-genomes, were distinguished (bootstrap indices = 100). The subject of our study, A. macrostachya, albeit belonging to the phylogenetic branch of C-genome oat species (karyotype with submetacentic and subacrocentric chromosomes), has preserved an isobrachyal karyotype, (i.e., that containing metacentric chromosomes), probably typical of the common Avena ancestor. It was suggested to classify the A. macrostachya genome as a specific form of C-genome, Cm-genome. Among the species from other genera studied, Arrhenatherum elatius was found to be the closest to Avena in ITS1 and ITS sequence. Phylogenetic relationships between Avena and Helictotrichon remain intriguingly uncertain. The HPR389153 sequence from H. pratense genome was closest to the ITS1 sequences specific to the Avena A-genomes (p-distance = 0.0237), while the p-distance between this sequence and the ITS1 of A. macrostachya reached 0.1221. On the other hand, HAD389117 from H. adsurgens was close to the ITS1 specific to Avena C-genomes (p-distance = 0.0189), while its differences from the A-genome specific ITS1 sequences reached 0.1221. It seems likely that the appearance of highly polyploid (2n = 12x-21x) species of H. pratense and H. adsurgens could be associated with interspecific hybridization involving Mediterranean oat species carrying A- and C-genomes. A hypothesis on the pathways of Avena chromosomes evolution during the early events the oat species divergence is proposed. More... »

PAGES

518-528

References to SciGraph publications

  • 1997-06. Phylogenetic analysis in the Festuca-Lolium complex using molecular markers and ITS rDNA in THEORETICAL AND APPLIED GENETICS
  • 1991-10. Collection ofAvena Macrostachya Bal. Ex Coss. et Dur. (Poaceae) germplasm in algeria in ECONOMIC BOTANY
  • 1992-10. Nucleotide sequence of the internal transcribed spacer region of rDNA in the primitive oat species,Avena longiglumis Durieu (Gramineae) in PLANT MOLECULAR BIOLOGY
  • 2001-05. Interspecific Crosses in the Genus Avena L. in RUSSIAN JOURNAL OF GENETICS
  • 1995-03. Molecular phylogeny of the Pooideae (Poaceae) based on nuclear rDNA (ITS) sequences in THEORETICAL AND APPLIED GENETICS
  • 2004-06. Genome and species relationships in genus Avena based on RAPD and AFLP molecular markers in THEORETICAL AND APPLIED GENETICS
  • 1997-12. A Conserved Motif in the 5.8S Ribosomal RNA (rRNA) Gene is a Useful Diagnostic Marker for Plant Internal Transcribed Spacer (ITS) Sequences in PLANT MOLECULAR BIOLOGY REPORTER
  • 2000-10. Evolution of Parental ITS Regions of Nuclear rDNA in Allopolyploid Aegilops (Poaceae) Species in HEREDITAS
  • 1998-09. Molecular phylogenetic relationships inAveneae (Poaceae) species and other grasses as inferred from ITS1 and ITS2 rDNA sequences in PLANT SYSTEMATICS AND EVOLUTION
  • 1973-03. Genetic control of bivalent pairing in the Avena strigosa polyploid complex in CHROMOSOMA
  • 2000-02. Identification of C-genome chromosomes involved in intergenomic translocations in Avena sativa L., using cloned repetitive DNA sequences in THEORETICAL AND APPLIED GENETICS
  • 1991-03. Angiosperm origin and early stages of seed plant evolution deduced from rRNA sequence comparisons in JOURNAL OF MOLECULAR EVOLUTION
  • Journal

    TITLE

    Russian Journal of Genetics

    ISSUE

    5

    VOLUME

    41

    Author Affiliations

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s11177-005-0120-y

    DOI

    http://dx.doi.org/10.1007/s11177-005-0120-y

    DIMENSIONS

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    41 schema:description To examine the genomic configuration of Avena macrostachya, internal transcribed spacers, ITS1 and ITS2, as well as nuclear 5.8S rRNA genes from three oat species with AsAs karyotype (A. wiestii, A. hirtula, and A. atlantica), and those from A. longiglumis (AlAl), A. canariensis (AcAc), A. ventricosa (CvCv), A. pilosa, and A. clauda (CpCp) were sequenced. All species of the genus Avena examined represented a monophyletic group (bootstrap index = 98), within which two branches, i.e., species with A- and C-genomes, were distinguished (bootstrap indices = 100). The subject of our study, A. macrostachya, albeit belonging to the phylogenetic branch of C-genome oat species (karyotype with submetacentic and subacrocentric chromosomes), has preserved an isobrachyal karyotype, (i.e., that containing metacentric chromosomes), probably typical of the common Avena ancestor. It was suggested to classify the A. macrostachya genome as a specific form of C-genome, Cm-genome. Among the species from other genera studied, Arrhenatherum elatius was found to be the closest to Avena in ITS1 and ITS sequence. Phylogenetic relationships between Avena and Helictotrichon remain intriguingly uncertain. The HPR389153 sequence from H. pratense genome was closest to the ITS1 sequences specific to the Avena A-genomes (p-distance = 0.0237), while the p-distance between this sequence and the ITS1 of A. macrostachya reached 0.1221. On the other hand, HAD389117 from H. adsurgens was close to the ITS1 specific to Avena C-genomes (p-distance = 0.0189), while its differences from the A-genome specific ITS1 sequences reached 0.1221. It seems likely that the appearance of highly polyploid (2n = 12x-21x) species of H. pratense and H. adsurgens could be associated with interspecific hybridization involving Mediterranean oat species carrying A- and C-genomes. A hypothesis on the pathways of Avena chromosomes evolution during the early events the oat species divergence is proposed.
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