Ontology type: schema:ScholarlyArticle
2021-06
AUTHORSSabrina W. Leung, Patricia L. Baker, Kevin E. Redding
ABSTRACTThe heliobacteria, a family of anoxygenic phototrophs, possess the simplest known photosynthetic apparatus. Although they are photoheterotrophs in the light, the heliobacteria can also grow chemotrophically via pyruvate metabolism in the dark. In the heliobacteria, the cytochrome bc complex is responsible for oxidizing menaquinol and reducing cytochrome c553 in the electron flow cycle used for phototrophy. However, there is no known electron acceptor for the mobile cytochrome c553 other than the photochemical reaction center. We have, therefore, hypothesized that the cytochrome bc complex is necessary for phototrophy, but unnecessary for chemotrophic growth in the dark. We used a two-step method for CRISPR-based genome editing in Heliobacterium modesticaldum to delete the genes encoding the four major subunits of the cytochrome bc complex. Genotypic analysis verified the deletion of the petCBDA gene cluster encoding the catalytic components of the complex. Spectroscopic studies revealed that re-reduction of cytochrome c553 after flash-induced photo-oxidation was over 100 times slower in the ∆petCBDA mutant compared to the wild-type. Steady-state levels of oxidized P800 (the primary donor of the photochemical reaction center) were much higher in the ∆petCBDA mutant at every light level, consistent with a limitation in electron flow to the reaction center. The ∆petCBDA mutant was unable to grow phototrophically on acetate plus CO2 but could grow chemotrophically on pyruvate as a carbon source similar to the wild-type strain in the dark. The mutants could be complemented by reintroduction of the petCBDA gene cluster on a plasmid expressed from the clostridial eno promoter. More... »
PAGES137-152
http://scigraph.springernature.com/pub.10.1007/s11120-021-00845-z
DOIhttp://dx.doi.org/10.1007/s11120-021-00845-z
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1139517406
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/34236566
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Adaptation, Ocular",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cell Survival",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Clostridiales",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cytochromes",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Dark Adaptation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Deletion",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Mutation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Photosynthesis",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "School of Molecular Sciences, Arizona State University, 1711 S Rural Rd, Box 871604, 85287-1604, Tempe, AZ, USA",
"id": "http://www.grid.ac/institutes/grid.215654.1",
"name": [
"School of Molecular Sciences, Arizona State University, 1711 S Rural Rd, Box 871604, 85287-1604, Tempe, AZ, USA"
],
"type": "Organization"
},
"familyName": "Leung",
"givenName": "Sabrina W.",
"id": "sg:person.013271520217.62",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013271520217.62"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "School of Molecular Sciences, Arizona State University, 1711 S Rural Rd, Box 871604, 85287-1604, Tempe, AZ, USA",
"id": "http://www.grid.ac/institutes/grid.215654.1",
"name": [
"School of Molecular Sciences, Arizona State University, 1711 S Rural Rd, Box 871604, 85287-1604, Tempe, AZ, USA"
],
"type": "Organization"
},
"familyName": "Baker",
"givenName": "Patricia L.",
"id": "sg:person.01042026314.63",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01042026314.63"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "School of Molecular Sciences, Arizona State University, 1711 S Rural Rd, Box 871604, 85287-1604, Tempe, AZ, USA",
"id": "http://www.grid.ac/institutes/grid.215654.1",
"name": [
"School of Molecular Sciences, Arizona State University, 1711 S Rural Rd, Box 871604, 85287-1604, Tempe, AZ, USA"
],
"type": "Organization"
},
"familyName": "Redding",
"givenName": "Kevin E.",
"id": "sg:person.01272503314.34",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01272503314.34"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/s11120-019-00672-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1121175874",
"https://doi.org/10.1007/s11120-019-00672-3"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00290810",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1035958325",
"https://doi.org/10.1007/bf00290810"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-94-017-8742-0_13",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012629009",
"https://doi.org/10.1007/978-94-017-8742-0_13"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/0-387-30744-3_31",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046234444",
"https://doi.org/10.1007/0-387-30744-3_31"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11120-009-9524-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045839785",
"https://doi.org/10.1007/s11120-009-9524-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00393378",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021995899",
"https://doi.org/10.1007/bf00393378"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11120-012-9726-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049636598",
"https://doi.org/10.1007/s11120-012-9726-9"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11120-018-0496-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1101509061",
"https://doi.org/10.1007/s11120-018-0496-x"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11120-013-9957-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022940263",
"https://doi.org/10.1007/s11120-013-9957-4"
],
"type": "CreativeWork"
}
],
"datePublished": "2021-06",
"datePublishedReg": "2021-06-01",
"description": "The heliobacteria, a family of anoxygenic phototrophs, possess the simplest known photosynthetic apparatus. Although they are photoheterotrophs in the light, the heliobacteria can also grow chemotrophically via pyruvate metabolism in the dark. In the heliobacteria, the cytochrome bc complex is responsible for oxidizing menaquinol and reducing cytochrome c553 in the electron flow cycle used for phototrophy. However, there is no known electron acceptor for the mobile cytochrome c553 other than the photochemical reaction center. We have, therefore, hypothesized that the cytochrome bc complex is necessary for phototrophy, but unnecessary for chemotrophic growth in the dark. We used a two-step method for CRISPR-based genome editing in Heliobacterium modesticaldum to delete the genes encoding the four major subunits of the cytochrome bc complex. Genotypic analysis verified the deletion of the petCBDA gene cluster encoding the catalytic components of the complex. Spectroscopic studies revealed that re-reduction of cytochrome c553 after flash-induced photo-oxidation was over 100 times slower in the \u2206petCBDA mutant compared to the wild-type. Steady-state levels of oxidized P800 (the primary donor of the photochemical reaction center) were much higher in the \u2206petCBDA mutant at every light level, consistent with a limitation in electron flow to the reaction center. The \u2206petCBDA mutant was unable to grow phototrophically on acetate plus CO2 but could grow chemotrophically on pyruvate as a carbon source similar to the wild-type strain in the dark. The mutants could be complemented by reintroduction of the petCBDA gene cluster on a plasmid expressed from the clostridial eno promoter.",
"genre": "article",
"id": "sg:pub.10.1007/s11120-021-00845-z",
"inLanguage": "en",
"isAccessibleForFree": false,
"isFundedItemOf": [
{
"id": "sg:grant.4322241",
"type": "MonetaryGrant"
}
],
"isPartOf": [
{
"id": "sg:journal.1022986",
"issn": [
"0166-8595",
"1573-5079"
],
"name": "Photosynthesis Research",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "3",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "148"
}
],
"keywords": [
"cytochrome bc complex",
"cytochrome c553",
"reaction centers",
"bc complex",
"photochemical reaction center",
"spectroscopic studies",
"electron acceptor",
"two-step method",
"complexes",
"c553",
"Heliobacterium modesticaldum",
"catalytic component",
"heliobacteria",
"electron flow",
"menaquinol",
"acceptor",
"carbon source",
"anoxygenic phototrophs",
"dark",
"genome editing",
"photosynthetic apparatus",
"chemotrophic growth",
"clusters",
"acetate",
"CO2",
"pyruvate metabolism",
"gene cluster",
"light",
"P800",
"phototrophs",
"cycle",
"center",
"method",
"CRISPR",
"pyruvate",
"apparatus",
"editing",
"major subunit",
"wild-type strain",
"subunits",
"analysis",
"components",
"time",
"mutants",
"steady-state levels",
"source",
"plasmid",
"cells",
"photoheterotrophs",
"phototrophy",
"growth",
"genotypic analysis",
"deletion",
"study",
"light levels",
"limitations",
"results",
"genes",
"levels",
"strains",
"promoter",
"family",
"metabolism",
"flow cycle",
"reintroduction",
"flow"
],
"name": "Deletion of the cytochrome bc complex from Heliobacterium modesticaldum results in viable but non-phototrophic cells",
"pagination": "137-152",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1139517406"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s11120-021-00845-z"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"34236566"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s11120-021-00845-z",
"https://app.dimensions.ai/details/publication/pub.1139517406"
],
"sdDataset": "articles",
"sdDatePublished": "2022-06-01T22:24",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220601/entities/gbq_results/article/article_889.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1007/s11120-021-00845-z"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s11120-021-00845-z'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s11120-021-00845-z'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s11120-021-00845-z'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s11120-021-00845-z'
This table displays all metadata directly associated to this object as RDF triples.
212 TRIPLES
22 PREDICATES
110 URIs
93 LITERALS
15 BLANK NODES