Properties and structure of a low-potential, penta-heme cytochrome c552 from a thermophilic purple sulfur photosynthetic bacterium Thermochromatium tepidum View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2019-03

AUTHORS

Jing-Hua Chen, Long-Jiang Yu, Alain Boussac, Zheng-Yu Wang-Otomo, Tingyun Kuang, Jian-Ren Shen

ABSTRACT

The thermophilic purple sulfur bacterium Thermochromatium tepidum possesses four main water-soluble redox proteins involved in the electron transfer behavior. Crystal structures have been reported for three of them: a high potential iron-sulfur protein, cytochrome c', and one of two low-potential cytochrome c552 (which is a flavocytochrome c) have been determined. In this study, we purified another low-potential cytochrome c552 (LPC), determined its N-terminal amino acid sequence and the whole gene sequence, characterized it with absorption and electron paramagnetic spectroscopy, and solved its high-resolution crystal structure. This novel cytochrome was found to contain five c-type hemes. The overall fold of LPC consists of two distinct domains, one is the five heme-containing domain and the other one is an Ig-like domain. This provides a representative example for the structures of multiheme cytochromes containing an odd number of hemes, although the structures of multiheme cytochromes with an even number of hemes are frequently seen in the PDB database. Comparison of the sequence and structure of LPC with other proteins in the databases revealed several characteristic features which may be important for its functioning. Based on the results obtained, we discuss the possible intracellular function of this LPC in Tch. tepidum. More... »

PAGES

281-293

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s11120-018-0507-y

DOI

http://dx.doi.org/10.1007/s11120-018-0507-y

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1103606653

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/29691716


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biochemistry and Cell Biology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Chromatiaceae", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Crystallography, X-Ray", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Cytochrome c Group", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Cytochromes c", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Electron Transport", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Heme", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "University of Chinese Academy of Sciences", 
          "id": "https://www.grid.ac/institutes/grid.410726.6", 
          "name": [
            "Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, No. 20, Nanxincun, Xiangshan, 100093, Beijing, China", 
            "Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, 700-8530, Okayama, Japan", 
            "University of Chinese Academy of Sciences, Yuquan Rd, Shijingshan District, 100049, Beijing, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Chen", 
        "givenName": "Jing-Hua", 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Okayama University", 
          "id": "https://www.grid.ac/institutes/grid.261356.5", 
          "name": [
            "Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, 700-8530, Okayama, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Yu", 
        "givenName": "Long-Jiang", 
        "id": "sg:person.01065340033.19", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01065340033.19"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "CEA Saclay", 
          "id": "https://www.grid.ac/institutes/grid.457334.2", 
          "name": [
            "I2BC, SB2SM, CNRS UMR 9198, CEA Saclay, 91191, Gif-sur-Yvette, France"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Boussac", 
        "givenName": "Alain", 
        "id": "sg:person.01232306506.30", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01232306506.30"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Ibaraki University", 
          "id": "https://www.grid.ac/institutes/grid.410773.6", 
          "name": [
            "Faculty of Science, Ibaraki University, Mito, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wang-Otomo", 
        "givenName": "Zheng-Yu", 
        "id": "sg:person.01372144120.46", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01372144120.46"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Institute of Botany", 
          "id": "https://www.grid.ac/institutes/grid.435133.3", 
          "name": [
            "Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, No. 20, Nanxincun, Xiangshan, 100093, Beijing, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kuang", 
        "givenName": "Tingyun", 
        "id": "sg:person.01017366543.07", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01017366543.07"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Okayama University", 
          "id": "https://www.grid.ac/institutes/grid.261356.5", 
          "name": [
            "Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, No. 20, Nanxincun, Xiangshan, 100093, Beijing, China", 
            "Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, 700-8530, Okayama, Japan"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Shen", 
        "givenName": "Jian-Ren", 
        "id": "sg:person.0576212465.23", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0576212465.23"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1093/nar/gkl1018", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000735345"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0005-2728(97)00041-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1004863410"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1023/a:1005718404736", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005511356", 
          "https://doi.org/10.1023/a:1005718404736"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0021-9673(01)87457-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1006152392"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1107/s0907444909038360", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007316761"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1107/s0907444909038360", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007316761"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s007750100213", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007426039", 
          "https://doi.org/10.1007/s007750100213"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0005-2728(96)00092-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011769244"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/22802", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013916357", 
          "https://doi.org/10.1038/22802"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/22802", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1013916357", 
          "https://doi.org/10.1038/22802"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1046/j.1432-1327.2000.01637.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017005107"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/2975", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017663004", 
          "https://doi.org/10.1038/2975"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.m211777200", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017710581"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1098/rstb.2002.1192", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017824745"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1107/s0907444909042073", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018458004"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1107/s0907444909042073", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1018458004"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkq366", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019751093"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1107/s0907444904019158", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020281098"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.m110.212183", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020283283"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nsb0497-276", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022846124", 
          "https://doi.org/10.1038/nsb0497-276"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.bbabio.2013.03.010", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026143572"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1046/j.1432-1327.1999.00461.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028334856"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1515/bc.2009.085", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030411458"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.71.9.5371-5382.2005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030572908"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1107/s0907444909047337", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032162623"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1107/s0907444909047337", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032162623"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1107/s0907444911001314", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032555428"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0003-9861(85)90605-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034619840"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1432-1033.1997.00323.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036490230"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.febslet.2013.08.023", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036847370"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0167-4838(00)00111-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039307638"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/prot.22747", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042405230"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1002/prot.22747", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042405230"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.274.49.35005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046724431"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1107/s0907444906022116", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048359585"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1146/annurev.iy.06.040188.002121", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048554893"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00775-006-0095-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049236546", 
          "https://doi.org/10.1007/s00775-006-0095-8"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00775-006-0095-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049236546", 
          "https://doi.org/10.1007/s00775-006-0095-8"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00775-010-0623-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049538786", 
          "https://doi.org/10.1007/s00775-010-0623-4"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00775-010-0623-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049538786", 
          "https://doi.org/10.1007/s00775-010-0623-4"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/emboj/cdf566", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051590587"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkn757", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051916274"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.m006188200", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1053447225"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/cr050241v", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1054057824"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/cr050241v", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1054057824"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/bi015765d", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055194933"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/bi015765d", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055194933"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/bi2017377", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055204765"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/bi8001264", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055208350"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/bi8001264", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055208350"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/ja020922x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055826178"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/ja020922x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055826178"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1074/jbc.m116.735530", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1058215134"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1120306", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062453219"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/jb.179.24.7617-7624.1997", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062726538"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1246/bcsj.78.2164", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1064477666"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1078410091", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1082865419", 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2019-03", 
    "datePublishedReg": "2019-03-01", 
    "description": "The thermophilic purple sulfur bacterium Thermochromatium tepidum possesses four main water-soluble redox proteins involved in the electron transfer behavior. Crystal structures have been reported for three of them: a high potential iron-sulfur protein, cytochrome c', and one of two low-potential cytochrome c552 (which is a flavocytochrome c) have been determined. In this study, we purified another low-potential cytochrome c552 (LPC), determined its N-terminal amino acid sequence and the whole gene sequence, characterized it with absorption and electron paramagnetic spectroscopy, and solved its high-resolution crystal structure. This novel cytochrome was found to contain five c-type hemes. The overall fold of LPC consists of two distinct domains, one is the five heme-containing domain and the other one is an Ig-like domain. This provides a representative example for the structures of multiheme cytochromes containing an odd number of hemes, although the structures of multiheme cytochromes with an even number of hemes are frequently seen in the PDB database. Comparison of the sequence and structure of LPC with other proteins in the databases revealed several characteristic features which may be important for its functioning. Based on the results obtained, we discuss the possible intracellular function of this LPC in Tch. tepidum.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s11120-018-0507-y", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.6957874", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1022986", 
        "issn": [
          "0166-8595", 
          "1573-5079"
        ], 
        "name": "Photosynthesis Research", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1-3", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "139"
      }
    ], 
    "name": "Properties and structure of a low-potential, penta-heme cytochrome c552 from a thermophilic purple sulfur photosynthetic bacterium Thermochromatium tepidum", 
    "pagination": "281-293", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "b11a5b78464823951c107d28bd4086b108b41a13b7b0d63494fbde299c20cc9e"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "29691716"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "100954728"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s11120-018-0507-y"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1103606653"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s11120-018-0507-y", 
      "https://app.dimensions.ai/details/publication/pub.1103606653"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T11:01", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000352_0000000352/records_60342_00000003.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://link.springer.com/10.1007%2Fs11120-018-0507-y"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s11120-018-0507-y'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s11120-018-0507-y'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s11120-018-0507-y'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s11120-018-0507-y'


 

This table displays all metadata directly associated to this object as RDF triples.

290 TRIPLES      21 PREDICATES      82 URIs      27 LITERALS      15 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s11120-018-0507-y schema:about N09e546be33b644faac3f692470d8c839
2 N585e9fafea7940ab83720a5b9f993290
3 N5f78c0e7ab8f477eb9b2039d6f4c612f
4 N673f1b1363dd49f3af1e6bd22dec5310
5 Nbb45485bc833416dbcefc653f94437c3
6 Nc96b595b848644c8a425bf58be184585
7 anzsrc-for:06
8 anzsrc-for:0601
9 schema:author Na6ce36c503314cddaea1218ef3112d05
10 schema:citation sg:pub.10.1007/s00775-006-0095-8
11 sg:pub.10.1007/s00775-010-0623-4
12 sg:pub.10.1007/s007750100213
13 sg:pub.10.1023/a:1005718404736
14 sg:pub.10.1038/22802
15 sg:pub.10.1038/2975
16 sg:pub.10.1038/nsb0497-276
17 https://app.dimensions.ai/details/publication/pub.1078410091
18 https://app.dimensions.ai/details/publication/pub.1082865419
19 https://doi.org/10.1002/prot.22747
20 https://doi.org/10.1016/0003-9861(85)90605-8
21 https://doi.org/10.1016/0005-2728(96)00092-8
22 https://doi.org/10.1016/j.bbabio.2013.03.010
23 https://doi.org/10.1016/j.febslet.2013.08.023
24 https://doi.org/10.1016/s0005-2728(97)00041-8
25 https://doi.org/10.1016/s0021-9673(01)87457-4
26 https://doi.org/10.1016/s0167-4838(00)00111-4
27 https://doi.org/10.1021/bi015765d
28 https://doi.org/10.1021/bi2017377
29 https://doi.org/10.1021/bi8001264
30 https://doi.org/10.1021/cr050241v
31 https://doi.org/10.1021/ja020922x
32 https://doi.org/10.1046/j.1432-1327.1999.00461.x
33 https://doi.org/10.1046/j.1432-1327.2000.01637.x
34 https://doi.org/10.1074/jbc.274.49.35005
35 https://doi.org/10.1074/jbc.m006188200
36 https://doi.org/10.1074/jbc.m110.212183
37 https://doi.org/10.1074/jbc.m116.735530
38 https://doi.org/10.1074/jbc.m211777200
39 https://doi.org/10.1093/emboj/cdf566
40 https://doi.org/10.1093/nar/gkl1018
41 https://doi.org/10.1093/nar/gkn757
42 https://doi.org/10.1093/nar/gkq366
43 https://doi.org/10.1098/rstb.2002.1192
44 https://doi.org/10.1107/s0907444904019158
45 https://doi.org/10.1107/s0907444906022116
46 https://doi.org/10.1107/s0907444909038360
47 https://doi.org/10.1107/s0907444909042073
48 https://doi.org/10.1107/s0907444909047337
49 https://doi.org/10.1107/s0907444911001314
50 https://doi.org/10.1111/j.1432-1033.1997.00323.x
51 https://doi.org/10.1126/science.1120306
52 https://doi.org/10.1128/aem.71.9.5371-5382.2005
53 https://doi.org/10.1128/jb.179.24.7617-7624.1997
54 https://doi.org/10.1146/annurev.iy.06.040188.002121
55 https://doi.org/10.1246/bcsj.78.2164
56 https://doi.org/10.1515/bc.2009.085
57 schema:datePublished 2019-03
58 schema:datePublishedReg 2019-03-01
59 schema:description The thermophilic purple sulfur bacterium Thermochromatium tepidum possesses four main water-soluble redox proteins involved in the electron transfer behavior. Crystal structures have been reported for three of them: a high potential iron-sulfur protein, cytochrome c', and one of two low-potential cytochrome c<sub>552</sub> (which is a flavocytochrome c) have been determined. In this study, we purified another low-potential cytochrome c<sub>552</sub> (LPC), determined its N-terminal amino acid sequence and the whole gene sequence, characterized it with absorption and electron paramagnetic spectroscopy, and solved its high-resolution crystal structure. This novel cytochrome was found to contain five c-type hemes. The overall fold of LPC consists of two distinct domains, one is the five heme-containing domain and the other one is an Ig-like domain. This provides a representative example for the structures of multiheme cytochromes containing an odd number of hemes, although the structures of multiheme cytochromes with an even number of hemes are frequently seen in the PDB database. Comparison of the sequence and structure of LPC with other proteins in the databases revealed several characteristic features which may be important for its functioning. Based on the results obtained, we discuss the possible intracellular function of this LPC in Tch. tepidum.
60 schema:genre research_article
61 schema:inLanguage en
62 schema:isAccessibleForFree false
63 schema:isPartOf N1eed21466e6c41719190e0313298cd2b
64 N2e1c9a32661346a8aa4df4ef8ad52c91
65 sg:journal.1022986
66 schema:name Properties and structure of a low-potential, penta-heme cytochrome c552 from a thermophilic purple sulfur photosynthetic bacterium Thermochromatium tepidum
67 schema:pagination 281-293
68 schema:productId N04fee3aa927c4b3090c5e672b0a9ae77
69 N36c5a7f388f54d4ca543c66aadeeeea2
70 Nacdcbd54c8104758a0e3cea52a2259f6
71 Nb6d039e5f49844b090199b20480711a0
72 Ne24626d10ae349fc8082232af2bf6929
73 schema:sameAs https://app.dimensions.ai/details/publication/pub.1103606653
74 https://doi.org/10.1007/s11120-018-0507-y
75 schema:sdDatePublished 2019-04-11T11:01
76 schema:sdLicense https://scigraph.springernature.com/explorer/license/
77 schema:sdPublisher N373f95dc21c04ef985d09fe9f05ec7b7
78 schema:url https://link.springer.com/10.1007%2Fs11120-018-0507-y
79 sgo:license sg:explorer/license/
80 sgo:sdDataset articles
81 rdf:type schema:ScholarlyArticle
82 N04fee3aa927c4b3090c5e672b0a9ae77 schema:name doi
83 schema:value 10.1007/s11120-018-0507-y
84 rdf:type schema:PropertyValue
85 N09e546be33b644faac3f692470d8c839 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
86 schema:name Cytochromes c
87 rdf:type schema:DefinedTerm
88 N161a902be1ca4a0d933d023f3e7c711b rdf:first sg:person.0576212465.23
89 rdf:rest rdf:nil
90 N1eed21466e6c41719190e0313298cd2b schema:volumeNumber 139
91 rdf:type schema:PublicationVolume
92 N2e1c9a32661346a8aa4df4ef8ad52c91 schema:issueNumber 1-3
93 rdf:type schema:PublicationIssue
94 N36c5a7f388f54d4ca543c66aadeeeea2 schema:name nlm_unique_id
95 schema:value 100954728
96 rdf:type schema:PropertyValue
97 N373f95dc21c04ef985d09fe9f05ec7b7 schema:name Springer Nature - SN SciGraph project
98 rdf:type schema:Organization
99 N374234d952dd4c39916ea4520a5533f3 rdf:first sg:person.01017366543.07
100 rdf:rest N161a902be1ca4a0d933d023f3e7c711b
101 N585e9fafea7940ab83720a5b9f993290 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
102 schema:name Crystallography, X-Ray
103 rdf:type schema:DefinedTerm
104 N595be9e2d25542218051d261525fc2bb rdf:first sg:person.01232306506.30
105 rdf:rest N9509d4234e8244cfa1f6d5bae0c2bb06
106 N5f78c0e7ab8f477eb9b2039d6f4c612f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
107 schema:name Electron Transport
108 rdf:type schema:DefinedTerm
109 N612de325d92341c8a5a18b35a70a01dc rdf:first sg:person.01065340033.19
110 rdf:rest N595be9e2d25542218051d261525fc2bb
111 N673f1b1363dd49f3af1e6bd22dec5310 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
112 schema:name Cytochrome c Group
113 rdf:type schema:DefinedTerm
114 N9509d4234e8244cfa1f6d5bae0c2bb06 rdf:first sg:person.01372144120.46
115 rdf:rest N374234d952dd4c39916ea4520a5533f3
116 Na6ce36c503314cddaea1218ef3112d05 rdf:first Nee473306a8ed4296bc30e07414a6aa9c
117 rdf:rest N612de325d92341c8a5a18b35a70a01dc
118 Nacdcbd54c8104758a0e3cea52a2259f6 schema:name readcube_id
119 schema:value b11a5b78464823951c107d28bd4086b108b41a13b7b0d63494fbde299c20cc9e
120 rdf:type schema:PropertyValue
121 Nb6d039e5f49844b090199b20480711a0 schema:name pubmed_id
122 schema:value 29691716
123 rdf:type schema:PropertyValue
124 Nbb45485bc833416dbcefc653f94437c3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
125 schema:name Heme
126 rdf:type schema:DefinedTerm
127 Nc96b595b848644c8a425bf58be184585 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
128 schema:name Chromatiaceae
129 rdf:type schema:DefinedTerm
130 Ne24626d10ae349fc8082232af2bf6929 schema:name dimensions_id
131 schema:value pub.1103606653
132 rdf:type schema:PropertyValue
133 Nee473306a8ed4296bc30e07414a6aa9c schema:affiliation https://www.grid.ac/institutes/grid.410726.6
134 schema:familyName Chen
135 schema:givenName Jing-Hua
136 rdf:type schema:Person
137 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
138 schema:name Biological Sciences
139 rdf:type schema:DefinedTerm
140 anzsrc-for:0601 schema:inDefinedTermSet anzsrc-for:
141 schema:name Biochemistry and Cell Biology
142 rdf:type schema:DefinedTerm
143 sg:grant.6957874 http://pending.schema.org/fundedItem sg:pub.10.1007/s11120-018-0507-y
144 rdf:type schema:MonetaryGrant
145 sg:journal.1022986 schema:issn 0166-8595
146 1573-5079
147 schema:name Photosynthesis Research
148 rdf:type schema:Periodical
149 sg:person.01017366543.07 schema:affiliation https://www.grid.ac/institutes/grid.435133.3
150 schema:familyName Kuang
151 schema:givenName Tingyun
152 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01017366543.07
153 rdf:type schema:Person
154 sg:person.01065340033.19 schema:affiliation https://www.grid.ac/institutes/grid.261356.5
155 schema:familyName Yu
156 schema:givenName Long-Jiang
157 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01065340033.19
158 rdf:type schema:Person
159 sg:person.01232306506.30 schema:affiliation https://www.grid.ac/institutes/grid.457334.2
160 schema:familyName Boussac
161 schema:givenName Alain
162 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01232306506.30
163 rdf:type schema:Person
164 sg:person.01372144120.46 schema:affiliation https://www.grid.ac/institutes/grid.410773.6
165 schema:familyName Wang-Otomo
166 schema:givenName Zheng-Yu
167 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01372144120.46
168 rdf:type schema:Person
169 sg:person.0576212465.23 schema:affiliation https://www.grid.ac/institutes/grid.261356.5
170 schema:familyName Shen
171 schema:givenName Jian-Ren
172 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0576212465.23
173 rdf:type schema:Person
174 sg:pub.10.1007/s00775-006-0095-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049236546
175 https://doi.org/10.1007/s00775-006-0095-8
176 rdf:type schema:CreativeWork
177 sg:pub.10.1007/s00775-010-0623-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049538786
178 https://doi.org/10.1007/s00775-010-0623-4
179 rdf:type schema:CreativeWork
180 sg:pub.10.1007/s007750100213 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007426039
181 https://doi.org/10.1007/s007750100213
182 rdf:type schema:CreativeWork
183 sg:pub.10.1023/a:1005718404736 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005511356
184 https://doi.org/10.1023/a:1005718404736
185 rdf:type schema:CreativeWork
186 sg:pub.10.1038/22802 schema:sameAs https://app.dimensions.ai/details/publication/pub.1013916357
187 https://doi.org/10.1038/22802
188 rdf:type schema:CreativeWork
189 sg:pub.10.1038/2975 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017663004
190 https://doi.org/10.1038/2975
191 rdf:type schema:CreativeWork
192 sg:pub.10.1038/nsb0497-276 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022846124
193 https://doi.org/10.1038/nsb0497-276
194 rdf:type schema:CreativeWork
195 https://app.dimensions.ai/details/publication/pub.1078410091 schema:CreativeWork
196 https://app.dimensions.ai/details/publication/pub.1082865419 schema:CreativeWork
197 https://doi.org/10.1002/prot.22747 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042405230
198 rdf:type schema:CreativeWork
199 https://doi.org/10.1016/0003-9861(85)90605-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034619840
200 rdf:type schema:CreativeWork
201 https://doi.org/10.1016/0005-2728(96)00092-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011769244
202 rdf:type schema:CreativeWork
203 https://doi.org/10.1016/j.bbabio.2013.03.010 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026143572
204 rdf:type schema:CreativeWork
205 https://doi.org/10.1016/j.febslet.2013.08.023 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036847370
206 rdf:type schema:CreativeWork
207 https://doi.org/10.1016/s0005-2728(97)00041-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1004863410
208 rdf:type schema:CreativeWork
209 https://doi.org/10.1016/s0021-9673(01)87457-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1006152392
210 rdf:type schema:CreativeWork
211 https://doi.org/10.1016/s0167-4838(00)00111-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039307638
212 rdf:type schema:CreativeWork
213 https://doi.org/10.1021/bi015765d schema:sameAs https://app.dimensions.ai/details/publication/pub.1055194933
214 rdf:type schema:CreativeWork
215 https://doi.org/10.1021/bi2017377 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055204765
216 rdf:type schema:CreativeWork
217 https://doi.org/10.1021/bi8001264 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055208350
218 rdf:type schema:CreativeWork
219 https://doi.org/10.1021/cr050241v schema:sameAs https://app.dimensions.ai/details/publication/pub.1054057824
220 rdf:type schema:CreativeWork
221 https://doi.org/10.1021/ja020922x schema:sameAs https://app.dimensions.ai/details/publication/pub.1055826178
222 rdf:type schema:CreativeWork
223 https://doi.org/10.1046/j.1432-1327.1999.00461.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1028334856
224 rdf:type schema:CreativeWork
225 https://doi.org/10.1046/j.1432-1327.2000.01637.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1017005107
226 rdf:type schema:CreativeWork
227 https://doi.org/10.1074/jbc.274.49.35005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046724431
228 rdf:type schema:CreativeWork
229 https://doi.org/10.1074/jbc.m006188200 schema:sameAs https://app.dimensions.ai/details/publication/pub.1053447225
230 rdf:type schema:CreativeWork
231 https://doi.org/10.1074/jbc.m110.212183 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020283283
232 rdf:type schema:CreativeWork
233 https://doi.org/10.1074/jbc.m116.735530 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058215134
234 rdf:type schema:CreativeWork
235 https://doi.org/10.1074/jbc.m211777200 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017710581
236 rdf:type schema:CreativeWork
237 https://doi.org/10.1093/emboj/cdf566 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051590587
238 rdf:type schema:CreativeWork
239 https://doi.org/10.1093/nar/gkl1018 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000735345
240 rdf:type schema:CreativeWork
241 https://doi.org/10.1093/nar/gkn757 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051916274
242 rdf:type schema:CreativeWork
243 https://doi.org/10.1093/nar/gkq366 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019751093
244 rdf:type schema:CreativeWork
245 https://doi.org/10.1098/rstb.2002.1192 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017824745
246 rdf:type schema:CreativeWork
247 https://doi.org/10.1107/s0907444904019158 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020281098
248 rdf:type schema:CreativeWork
249 https://doi.org/10.1107/s0907444906022116 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048359585
250 rdf:type schema:CreativeWork
251 https://doi.org/10.1107/s0907444909038360 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007316761
252 rdf:type schema:CreativeWork
253 https://doi.org/10.1107/s0907444909042073 schema:sameAs https://app.dimensions.ai/details/publication/pub.1018458004
254 rdf:type schema:CreativeWork
255 https://doi.org/10.1107/s0907444909047337 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032162623
256 rdf:type schema:CreativeWork
257 https://doi.org/10.1107/s0907444911001314 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032555428
258 rdf:type schema:CreativeWork
259 https://doi.org/10.1111/j.1432-1033.1997.00323.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1036490230
260 rdf:type schema:CreativeWork
261 https://doi.org/10.1126/science.1120306 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062453219
262 rdf:type schema:CreativeWork
263 https://doi.org/10.1128/aem.71.9.5371-5382.2005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030572908
264 rdf:type schema:CreativeWork
265 https://doi.org/10.1128/jb.179.24.7617-7624.1997 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062726538
266 rdf:type schema:CreativeWork
267 https://doi.org/10.1146/annurev.iy.06.040188.002121 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048554893
268 rdf:type schema:CreativeWork
269 https://doi.org/10.1246/bcsj.78.2164 schema:sameAs https://app.dimensions.ai/details/publication/pub.1064477666
270 rdf:type schema:CreativeWork
271 https://doi.org/10.1515/bc.2009.085 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030411458
272 rdf:type schema:CreativeWork
273 https://www.grid.ac/institutes/grid.261356.5 schema:alternateName Okayama University
274 schema:name Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, No. 20, Nanxincun, Xiangshan, 100093, Beijing, China
275 Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, 700-8530, Okayama, Japan
276 rdf:type schema:Organization
277 https://www.grid.ac/institutes/grid.410726.6 schema:alternateName University of Chinese Academy of Sciences
278 schema:name Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, No. 20, Nanxincun, Xiangshan, 100093, Beijing, China
279 Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, 700-8530, Okayama, Japan
280 University of Chinese Academy of Sciences, Yuquan Rd, Shijingshan District, 100049, Beijing, China
281 rdf:type schema:Organization
282 https://www.grid.ac/institutes/grid.410773.6 schema:alternateName Ibaraki University
283 schema:name Faculty of Science, Ibaraki University, Mito, Japan
284 rdf:type schema:Organization
285 https://www.grid.ac/institutes/grid.435133.3 schema:alternateName Institute of Botany
286 schema:name Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, No. 20, Nanxincun, Xiangshan, 100093, Beijing, China
287 rdf:type schema:Organization
288 https://www.grid.ac/institutes/grid.457334.2 schema:alternateName CEA Saclay
289 schema:name I2BC, SB2SM, CNRS UMR 9198, CEA Saclay, 91191, Gif-sur-Yvette, France
290 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...