Recognition of S-RNases by an S locus F-box like protein and an S haplotype-specific F-box like protein in the Prunus-specific ... View Full Text


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Article Info

DATE

2019-04-01

AUTHORS

Daiki Matsumoto, Ryutaro Tao

ABSTRACT

KEY MESSAGE: S-RNase was demonstrated to be predominantly recognized by an S locus F-box-like protein and an S haplotype-specific F-box-like protein in compatible pollen tubes of sweet cherry. Self-incompatibility (SI) is a reproductive barrier that rejects self-pollen and inhibits self-fertilization to promote outcrossing. In Solanaceae and Rosaceae, S-RNase-based gametophytic SI (GSI) comprises S-RNase and F-box protein(s) as the pistil and pollen S determinants, respectively. Compatible pollen tubes are assumed to detoxify the internalized cytotoxic S-RNases to maintain growth. S-RNase detoxification is conducted by the Skp1-cullin1-F-box protein complex (SCF) formed by pollen S determinants, S locus F-box proteins (SLFs), in Solanaceae. In Prunus, the general inhibitor (GI), but not pollen S determinant S haplotype-specific F-box protein (SFB), is hypothesized to detoxify S-RNases. Recently, SLF-like proteins 1-3 (SLFL1-3) were suggested as GI candidates, although it is still possible that other proteins function predominantly in GI. To identify the other GI candidates, we isolated four other pollen-expressed SLFL and SFB-like (SFBL) proteins PavSLFL6, PavSLFL7A, PavSFBL1, and PavSFBL2 in sweet cherry. Binding assays with four PavS-RNases indicated that PavSFBL2 bound to PavS1, 6-RNase while the others bound to nothing. PavSFBL2 was confirmed to form an SCF complex in vitro. A co-immunoprecipitation assay using the recombinant PavS6-RNase as bait against pollen extracts and a mass spectrometry analysis identified the SCF complex components of PavSLFLs and PavSFBL2, M-locus-encoded glutathione S-transferase (MGST), DnaJ-like protein, and other minor proteins. These results suggest that SLFLs and SFBLs could act as predominant GIs in Prunus-specific S-RNase-based GSI. More... »

PAGES

1-12

References to SciGraph publications

  • 2018-12. Inferences on specificity recognition at the Malus√ódomestica gametophytic self-incompatibility system in SCIENTIFIC REPORTS
  • 2010-05. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation in NATURE BIOTECHNOLOGY
  • 2017-05. Partial dispensability of Djp1's J domain in peroxisomal protein import in Saccharomyces cerevisiae results from genetic redundancy with another class II J protein, Caj1 in CELL STRESS AND CHAPERONES
  • 2004-05. Identification of the pollen determinant of S-RNase-mediated self-incompatibility in NATURE
  • 2008-08. An S-RNase-Based Gametophytic Self-Incompatibility System Evolved Only Once in Eudicots in JOURNAL OF MOLECULAR EVOLUTION
  • 2001-02. Selective inhibition of the growth of incompatible pollen tubes by S-protein in the Japanese pear in PLANT REPRODUCTION
  • 2009-11. Arabidopsis thaliana J-class heat shock proteins: cellular stress sensors in FUNCTIONAL & INTEGRATIVE GENOMICS
  • 2000-10. S-RNase uptake by compatible pollen tubes in gametophytic self-incompatibility in NATURE
  • 2001. Incompatibility and Incongruity in Wild and Cultivated Plants in NONE
  • 2006-02. Compartmentalization of S-RNase and HT-B degradation in self-incompatible Nicotiana in NATURE
  • 2014-03. Identification of the self-incompatibility locus F-box protein-containing complex in Petunia inflata in PLANT REPRODUCTION
  • 2016-07. Recognition of a wide-range of S-RNases by S locus F-box like 2, a general-inhibitor candidate in the Prunus-specific S-RNase-based self-incompatibility system in PLANT MOLECULAR BIOLOGY
  • 2015-01-08. Gene duplication and genetic exchange drive the evolution of S-RNase-based self-incompatibility in Petunia in NATURE PLANTS
  • 2012-04. Fast gapped-read alignment with Bowtie 2 in NATURE METHODS
  • Journal

    TITLE

    Plant Molecular Biology

    ISSUE

    N/A

    VOLUME

    N/A

    From Grant

  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s11103-019-00860-8

    DOI

    http://dx.doi.org/10.1007/s11103-019-00860-8

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1113176478

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/30937702


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