Parallel pigment and transcriptomic analysis of four barley Albina and Xantha mutants reveals the complex network of the chloroplast-dependent metabolism View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2009-06-26

AUTHORS

Chiara Campoli, Stefano Caffarri, Jan T. Svensson, Roberto Bassi, A. Michele Stanca, Luigi Cattivelli, Cristina Crosatti

ABSTRACT

We investigated the pigment composition and the transcriptome of albina (alb-e16 and alb-f17) and xantha (xan-s46 and xan-b12) barley mutants to provide an overall transcriptional picture of genes whose expression is interconnected with chloroplast activities and to search for candidate genes associated with the mutations. Beside those encoding plastid-localized proteins, more than 3,000 genes involved in non-chloroplast localized metabolism were up-/down-regulated in the mutants revealing the network of chloroplast-dependent metabolic pathways. The alb-e16 mutant was characterized by overaccumulation of protoporphyrin IX upon ALA (5-amino levulinic acid) feeding and down-regulation of the gene encoding one subunit of Mg-chelatase, suggesting a block of the chlorophyll biosynthetic pathway before Mg-protoporphyrin IX biosynthesis, while alb-f17 overaccumulated Mg-protoporphyrin IX and repressed PorA expression, without alterations in Mg-chelatase mRNA level. The alb-f17mutant also showed overexpression of several genes involved in phytochrome and in phytochrome-dependent pathways. The results indicate that the down-regulation of Lhcb genes in alb-e16 cannot be mediated by the accumulation of Mg-protoporphyrin IX. After ALA treatment, xan-s46 showed overaccumulation of Mg-protoporphyrin IX, while the relative porphyrin composition of xan-b12 was similar to wild type. The transcripts encoding the components of several mitochondrial metabolic pathways were up-regulated in albina/xantha leaves to compensate for the absence of active chloroplasts. The mRNAs encoding gun3, gun4, and gun5 barley homologous genes showed significant expression variations and were used to search for co-expressed genes across all samples. These analyses provide additional evidences on a chloroplast-dependent covariation of large sets of nuclear genes. More... »

PAGES

173-191

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s11103-009-9516-8

DOI

http://dx.doi.org/10.1007/s11103-009-9516-8

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1018945127

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/19557521


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