The effect of QTL-rich region polymorphisms identified by targeted DNA-seq on pig production traits View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2018-06

AUTHORS

Anna Stuczyńska, Katarzyna Piórkowska, Mirosław Tyra, Kacper Żukowski

ABSTRACT

The aim of the present study was to analyse the effect of PLCD4, PECR, FN1 and PNKD mutations on pig productive traits and tested the usefulness of targeted enrichment DNA sequencing method as tool for preselection of genetic markers. The potential genetic markers for pig productive traits were identified by using targeted enrichment DNA sequencing of chromosome 15 region that is QTL-rich. The selected mutations were genotyped by using HRM, Sanger sequencing and PCR-ACRS methods. The association study was performed by using GLM model in SAS program and included over 500 pigs of 5 populations maintained in Poland. The variation (C/T) of PLCD4 gene affected feed conversion, intramuscular fat and water exudation. The PNKD mutations were associated with texture parameters measured after cooking. In turn, the variation rs792423408 (C/T) in the FN1 gene influenced toughness measured in semimembranosus muscle and growth traits that was observed particularly in Duroc breed. Summarizing, the investigated gene variants delivered valuable information that could be used during developing SNP microarray for genomic estimated breeding value procedure in pigs. Moreover, the study showed that the TEDNA-seq method could be used to preselect the molecular markers associated with pig traits. However, the further association study that included large number animal populations is necessary. More... »

PAGES

361-371

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s11033-018-4170-3

DOI

http://dx.doi.org/10.1007/s11033-018-4170-3

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1103173921

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/29623566


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