Molecular and phenotypic characterization of the alternative seasonal growth habit and flowering time in barley (Hordeum vulgare ssp. vulgare L.) View Full Text


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Article Info

DATE

2015-08

AUTHORS

James Cockram, Richard Horsnell, Eun-hee Soh, Carol Norris, Donal M. O’Sullivan

ABSTRACT

Barley can be classified into three major agronomic types, based on its seasonal growth habit (SGH): spring, winter and alternative. Winter varieties require exposure to vernalization to promote subsequent flowering and are autumn-sown. Spring varieties proceed to flowering in the absence of vernalization and are sown in the spring. The ‘alternative’ (also known as ‘facultative’) SGH is only loosely defined and can be sown in autumn or spring. Here, we investigate the molecular genetic basis of alternative barley. Analysis of the major barley vernalization (VRN-H1, VRN-H2) and photoperiod (PPD-H1, PPD-H2) response genes in a collection of 386 varieties found alternative SGH to be characterized by specific allelic combinations. Spring varieties possessed spring loci at one or both of the vernalization response loci, combined with long-day non-responsive ppd-H1 alleles and wild-type alleles at the short-day photoperiod response locus, PPD-H2. Winter varieties possessed winter alleles at both vernalization loci, in combination with the mutant ppd-H2 allele conferring delayed flowering under short-day photoperiods. In contrast, all alternative varieties investigated possessed a single spring allele (either at VRN-H1 or at VRN-H2) combined with mutant ppd-H2 alleles. This allelic combination is found only in alternative types and is diagnostic for alternative SGH in the collection studied. Analysis of flowering time under controlled environment found alternative varieties flowered later than spring control lines, with the difference most pronounced under short-day photoperiods. This work provides genetic characterization of the alternative SGH phenotype, allowing precise manipulation of SGH and flowering time within breeding programmes, and provides the molecular tools for classification of all three SGH categories within national variety registration processes. More... »

PAGES

165

References to SciGraph publications

  • 2005-10. Molecular and Structural Characterization of Barley Vernalization Genes in PLANT MOLECULAR BIOLOGY
  • 2013. Variety Protection and Plant Breeders’ Rights in the ‘DNA Era’ in DIAGNOSTICS IN PLANT BREEDING
  • 2005-05. The Vrn-H2 locus is a major determinant of flowering time in a facultative × winter growth habit barley (Hordeum vulgare L.) mapping population in THEORETICAL AND APPLIED GENETICS
  • 2005-03. Large deletions within the first intron in VRN-1 are associated with spring growth habit in barley and wheat in MOLECULAR GENETICS AND GENOMICS
  • 2008-06. Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice in NATURE GENETICS
  • 2008-12. Association mapping of partitioning loci in barley in BMC GENETICS
  • 2010-06. CBF gene copy number variation at Frost Resistance-2 is associated with levels of freezing tolerance in temperate-climate cereals in THEORETICAL AND APPLIED GENETICS
  • 2007-03. Validation of the VRN-H2/VRN-H1 epistatic model in barley reveals that intron length variation in VRN-H1 may account for a continuum of vernalization sensitivity in MOLECULAR GENETICS AND GENOMICS
  • 2009-08. Regions associated with repression of the barley (Hordeum vulgare) VERNALIZATION1 gene are not required for cold induction in MOLECULAR GENETICS AND GENOMICS
  • 2015-04. The New Wheat Vernalization Response Allele Vrn-D1s is Caused by DNA Transposon Insertion in the First Intron in PLANT MOLECULAR BIOLOGY REPORTER
  • 2012-12. Evaluation of diagnostic molecular markers for DUS phenotypic assessment in the cereal crop, barley (Hordeum vulgare ssp. vulgare L.) in THEORETICAL AND APPLIED GENETICS
  • 2007-11. Haplotype analysis of vernalization loci in European barley germplasm reveals novel VRN-H1 alleles and a predominant winter VRN-H1/VRN-H2 multi-locus haplotype in THEORETICAL AND APPLIED GENETICS
  • 2013. Flowering Time in GENOMICS AND BREEDING FOR CLIMATE-RESILIENT CROPS
  • 2011-12. Evolutionary history of barley cultivation in Europe revealed by genetic analysis of extant landraces in BMC EVOLUTIONARY BIOLOGY
  • 2009-11. Genetic variants of HvCbf14 are statistically associated with frost tolerance in a European germplasm collection of Hordeum vulgare in THEORETICAL AND APPLIED GENETICS
  • 2007-11. Fine mapping of a HvCBF gene cluster at the frost resistance locus Fr-H2 in barley in THEORETICAL AND APPLIED GENETICS
  • 2013-09. The effect of day-neutral mutations in barley and wheat on the interaction between photoperiod and vernalization in THEORETICAL AND APPLIED GENETICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s11032-015-0359-5

    DOI

    http://dx.doi.org/10.1007/s11032-015-0359-5

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1046102897


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