Dissecting the telomere region of barley chromosome 5HL using rice genomic sequences as references: new markers for tracking a complex ... View Full Text


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Article Info

DATE

2010-02-18

AUTHORS

Xiao-Qi Zhang, Chengdao Li, Joe Panozzo, Sharon Westcott, Guoping Zhang, Amy Tay, Rudi Appels, Mike Jones, Reg Lance

ABSTRACT

The terminal region of barley chromosome 5HL controls malt extract, diastatic power, free amino acid nitrogen, alpha-amylase activity, seed dormancy and pre-harvest sprouting. Comparative analysis of the barley and rice maps has established that the terminal region of barley chromosome 5HL is syntenic to rice chromosome 3L near the telomere end. The rice BAC (Bacterial Artificial Chromosome) sequences covering the region of chromosome 3L were used to search barley expressed sequenced tags database. Thirty-three genes were amplified by PCR (polymerase chain reaction) with the primers designed from barley ESTs (expressed sequence tag). Comparison of the sequences of the PCR generated DNA fragments revealed polymorphisms including single nucleotide polymorphism (SNP), insertions or deletions between the barley varieties. Seven new PCR based molecular markers were developed and mapped within 10 cM in three doubled haploid barley populations (Stirling × Harrington, Baudin × AC Metcalfe and Chebec × Harrington). The mapped genes maintain the micro-syntenic relationship between barley and rice. These gene specific markers provide simple and efficient tools for germplasm characterization and marker-assisted selection for barley malting quality, and ultimately lead to isolation and identification of the major gene(s) controlling multiple quality traits on barley chromosome 5HL. More... »

PAGES

1-9

References to SciGraph publications

  • 2008-10-30. Pyramiding QTLs to improve malting quality in barley: gains in phenotype and genetic diversity in MOLECULAR BREEDING
  • 2008-03-20. A new PCR-based marker on chromosome 4AL for resistance to pre-harvest sprouting in wheat (Triticum aestivum L.) in MOLECULAR BREEDING
  • 2004-11-10. Analysis of QTLs for yield, yield components, and malting quality in a BC3-DH population of spring barley in THEORETICAL AND APPLIED GENETICS
  • 2005-12-01. RECORD: a novel method for ordering loci on a genetic linkage map in THEORETICAL AND APPLIED GENETICS
  • 2003-05-08. Molecular dissection of a dormancy QTL region near the chromosome 7 (5H) L telomere in barley in THEORETICAL AND APPLIED GENETICS
  • 2009. Genetic Improvement of Malting Quality through Conventional Breeding and Marker-assisted Selection in GENETICS AND IMPROVEMENT OF BARLEY MALT QUALITY
  • 1993-11. Quantitative trait locus effects and environmental interaction in a sample of North American barley germ plasm in THEORETICAL AND APPLIED GENETICS
  • 2008-02-18. Multiplex-Ready PCR: A new method for multiplexed SSR and SNP genotyping in BMC GENOMICS
  • 2000-07. QTL analysis of malting quality in barley based on the doubled-haploid progeny of two elite North American varieties representing different germplasm groups in THEORETICAL AND APPLIED GENETICS
  • 1996-01. Verification of barley seed dormancy loci via linked molecular markers in THEORETICAL AND APPLIED GENETICS
  • 2008-07-11. Quantitative trait loci associated with adaptation to Mediterranean dryland conditions in barley in THEORETICAL AND APPLIED GENETICS
  • 2004-02-10. Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison in FUNCTIONAL & INTEGRATIVE GENOMICS
  • 2001-12. Map Manager QTX, cross-platform software for genetic mapping in MAMMALIAN GENOME
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    URI

    http://scigraph.springernature.com/pub.10.1007/s11032-010-9408-2

    DOI

    http://dx.doi.org/10.1007/s11032-010-9408-2

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1033206654


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