Integration of Retrotransposons-Based Markers in a Linkage Map of Barley View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2006-02

AUTHORS

Monica Rodriguez, Donal O’Sullivan, Paolo Donini, Roberto Papa, Elena Chiapparino, Fiona Leigh, Giovanna Attene

ABSTRACT

A deeper understanding of random markers is important if they are to be employed for a range of objectives. The sequence specific amplified polymorphism (S-SAP) technique is a powerful genetic analysis tool which exploits the high copy number of retrotransposon long terminal repeats (LTRs) in the plant genome. The distribution and inheritance of S-SAP bands in the barley genome was studied using the Steptoe × Morex (S × M) double haploid (DH) population. Six S-SAP primer combinations generated 98 polymorphic bands, and map positions were assigned to all but one band. Eight putative co-dominant loci were detected, representing 16 of the mapped markers. Thus at least 81 of the mapped S-SAP loci were dominant. The markers were distributed along all of the seven chromosomes and a tendency to cluster was observed. The distribution of S-SAP markers over the barley genome concurred with the knowledge of the high copy number of retrotransposons in plants. This experiment has demonstrated the potential for the S-SAP technique to be applied in a range of analyses such as genetic fingerprinting, marker assisted breeding, biodiversity assessment and phylogenetic analyses. More... »

PAGES

173-184

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s11032-005-4885-4

DOI

http://dx.doi.org/10.1007/s11032-005-4885-4

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1029770087


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