Genome-wide analysis of the MYB-CC gene family of maize View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2019-02

AUTHORS

Jianrong Bai, Fengjie Sun, Minglei Wang, Liang Su, Rui Li, Gustavo Caetano-Anollés

ABSTRACT

The MYB-CC gene family encode proteins that harbor a combination of characteristic myeloblastosis (MYB) and coiled-coil (CC) domain structures. Some MYB-CC genes have been demonstrated to represent transcription factors regulating phosphate uptake and controlling the starvation response in plants. Despite their physiological importance, a systematic analysis of MYB-CC genes has not been reported in maize. In our study, we identified and characterized maize MYB-CC genes at whole-genome level. A total of 12 maize MYB-CC genes (ZmMYB-CC1 to ZmMYB-CC12) were identified located in six out of the 10 chromosomes of maize. Their gene structures showed similar splicing patterns and large variations of intron length. Multiple sequence alignments revealed that all MYB-CC proteins in maize shared conserved sequence cores corresponding to the MYB and CC domains, respectively. The family expanded in maize partly due to tandem and segmental duplication events. Phylogenetic analysis of MYB-CC genes indicated that the MYB-CC gene family can be divided into two subfamilies and that gene members with same functions were found in the same groups. Results provide a very useful reference for cloning and functional analysis of PHR-like genes in maize and suggest a method to predict and select appropriate candidate genes for functional genomic analysis of useful traits in crop plants. More... »

PAGES

1-9

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s10709-018-0042-y

DOI

http://dx.doi.org/10.1007/s10709-018-0042-y

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1107123914

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/30242535


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Conserved Sequence", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Genome, Plant", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Multigene Family", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Plant Proteins", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Protein Domains", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Transcription Factors", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Zea mays", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "name": [
            "Institute of Crop Sciences, Shanxi Academy of Agricultural Sciences, 030031, Taiyuan, Shanxi, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bai", 
        "givenName": "Jianrong", 
        "id": "sg:person.011616172650.20", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011616172650.20"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Georgia Gwinnett College", 
          "id": "https://www.grid.ac/institutes/grid.434838.0", 
          "name": [
            "School of Science and Technology, Georgia Gwinnett College, 30043, Lawrenceville, GA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Sun", 
        "givenName": "Fengjie", 
        "id": "sg:person.0740142103.16", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0740142103.16"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Illinois at Urbana Champaign", 
          "id": "https://www.grid.ac/institutes/grid.35403.31", 
          "name": [
            "Department of Crop Sciences, University of Illinois at Urbana-Champaign, 61801, Urbana, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Wang", 
        "givenName": "Minglei", 
        "id": "sg:person.01251605607.68", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01251605607.68"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Institute of Crop Sciences, Shanxi Academy of Agricultural Sciences, 030031, Taiyuan, Shanxi, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Su", 
        "givenName": "Liang", 
        "id": "sg:person.016233327144.95", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016233327144.95"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "name": [
            "Institute of Crop Sciences, Shanxi Academy of Agricultural Sciences, 030031, Taiyuan, Shanxi, China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Li", 
        "givenName": "Rui", 
        "id": "sg:person.07530255744.97", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07530255744.97"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "University of Illinois at Urbana Champaign", 
          "id": "https://www.grid.ac/institutes/grid.35403.31", 
          "name": [
            "Department of Crop Sciences, University of Illinois at Urbana-Champaign, 61801, Urbana, IL, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Caetano-Anoll\u00e9s", 
        "givenName": "Gustavo", 
        "id": "sg:person.01142731115.72", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01142731115.72"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/ng2079", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1000182181", 
          "https://doi.org/10.1038/ng2079"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11105-012-0534-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007448144", 
          "https://doi.org/10.1007/s11105-012-0534-3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btm404", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007683223"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/gad.204401", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011870981"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/msw054", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012564990"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.106.079707", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014002957"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1065889", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014012738"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1365-3040.2007.01734.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014961413"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.2535513100", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019960293"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0044005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021272719"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00425-009-0929-z", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021451210", 
          "https://doi.org/10.1007/s00425-009-0929-z"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00425-009-0929-z", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021451210", 
          "https://doi.org/10.1007/s00425-009-0929-z"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00425-009-0929-z", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021451210", 
          "https://doi.org/10.1007/s00425-009-0929-z"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-009-9691-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022505325", 
          "https://doi.org/10.1007/s11033-009-9691-3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-009-9691-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022505325", 
          "https://doi.org/10.1007/s11033-009-9691-3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-009-9691-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022505325", 
          "https://doi.org/10.1007/s11033-009-9691-3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-009-9547-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032408192", 
          "https://doi.org/10.1007/s11103-009-9547-1"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-009-9547-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032408192", 
          "https://doi.org/10.1007/s11103-009-9547-1"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.gene.2009.05.018", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033153625"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11105-010-0199-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038067130", 
          "https://doi.org/10.1007/s11105-010-0199-8"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11105-010-0199-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038067130", 
          "https://doi.org/10.1007/s11105-010-0199-8"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-009-9628-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040746195", 
          "https://doi.org/10.1007/s11033-009-9628-x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-009-9628-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040746195", 
          "https://doi.org/10.1007/s11033-009-9628-x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-010-0058-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041327192", 
          "https://doi.org/10.1007/s11033-010-0058-6"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-010-0058-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041327192", 
          "https://doi.org/10.1007/s11033-010-0058-6"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-009-9537-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041690824", 
          "https://doi.org/10.1007/s11103-009-9537-3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-009-9537-3", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041690824", 
          "https://doi.org/10.1007/s11103-009-9537-3"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-009-9610-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044803147", 
          "https://doi.org/10.1007/s11033-009-9610-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-009-9610-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044803147", 
          "https://doi.org/10.1007/s11033-009-9610-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11033-009-9610-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044803147", 
          "https://doi.org/10.1007/s11033-009-9610-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-009-9518-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047906478", 
          "https://doi.org/10.1007/s11103-009-9518-6"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s11103-009-9518-6", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1047906478", 
          "https://doi.org/10.1007/s11103-009-9518-6"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1104/pp.107.111443", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1054083387"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1178534", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062460510"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1360/yc-007-1023", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1065077939"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/oxfordjournals.molbev.a040454", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1079752303"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1082919443", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/j.1558-5646.1985.tb00420.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1085717760"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2019-02", 
    "datePublishedReg": "2019-02-01", 
    "description": "The MYB-CC gene family encode proteins that harbor a combination of characteristic myeloblastosis (MYB) and coiled-coil (CC) domain structures. Some MYB-CC genes have been demonstrated to represent transcription factors regulating phosphate uptake and controlling the starvation response in plants. Despite their physiological importance, a systematic analysis of MYB-CC genes has not been reported in maize. In our study, we identified and characterized maize MYB-CC genes at whole-genome level. A total of 12 maize MYB-CC genes (ZmMYB-CC1 to ZmMYB-CC12) were identified located in six out of the 10 chromosomes of maize. Their gene structures showed similar splicing patterns and large variations of intron length. Multiple sequence alignments revealed that all MYB-CC proteins in maize shared conserved sequence cores corresponding to the MYB and CC domains, respectively. The family expanded in maize partly due to tandem and segmental duplication events. Phylogenetic analysis of MYB-CC genes indicated that the MYB-CC gene family can be divided into two subfamilies and that gene members with same functions were found in the same groups. Results provide a very useful reference for cloning and functional analysis of PHR-like genes in maize and suggest a method to predict and select appropriate candidate genes for functional genomic analysis of useful traits in crop plants.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s10709-018-0042-y", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1017127", 
        "issn": [
          "0016-6707", 
          "1573-6857"
        ], 
        "name": "Genetica", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "1", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "147"
      }
    ], 
    "name": "Genome-wide analysis of the MYB-CC gene family of maize", 
    "pagination": "1-9", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "8a8ace7275e5a649c63208baefd6bfbd3c51b76f65e81089efa5123d619adc71"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "30242535"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "0370740"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s10709-018-0042-y"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1107123914"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s10709-018-0042-y", 
      "https://app.dimensions.ai/details/publication/pub.1107123914"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T12:54", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000364_0000000364/records_72862_00000001.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://link.springer.com/10.1007%2Fs10709-018-0042-y"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s10709-018-0042-y'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s10709-018-0042-y'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s10709-018-0042-y'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s10709-018-0042-y'


 

This table displays all metadata directly associated to this object as RDF triples.

229 TRIPLES      21 PREDICATES      62 URIs      28 LITERALS      16 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s10709-018-0042-y schema:about N066baf4f96054fcbbb39084b85595b0e
2 N090a15f2503b42c1bf8a889320854c2d
3 N3b8b4305c7e04e69a5839217108140b7
4 N3c45ef2b41f24bf3897740a16fcf965f
5 N8c8ee119e1a04edc8a006fda52a28ef1
6 Nafff519f558b4b5789fbd5801e13d962
7 Nf1273fe3239a4e92828bbddbe8e99912
8 anzsrc-for:06
9 anzsrc-for:0604
10 schema:author N65299512f2d64e259d01f5fe2122fa16
11 schema:citation sg:pub.10.1007/s00425-009-0929-z
12 sg:pub.10.1007/s11033-009-9610-7
13 sg:pub.10.1007/s11033-009-9628-x
14 sg:pub.10.1007/s11033-009-9691-3
15 sg:pub.10.1007/s11033-010-0058-6
16 sg:pub.10.1007/s11103-009-9518-6
17 sg:pub.10.1007/s11103-009-9537-3
18 sg:pub.10.1007/s11103-009-9547-1
19 sg:pub.10.1007/s11105-010-0199-8
20 sg:pub.10.1007/s11105-012-0534-3
21 sg:pub.10.1038/ng2079
22 https://app.dimensions.ai/details/publication/pub.1082919443
23 https://doi.org/10.1016/j.gene.2009.05.018
24 https://doi.org/10.1073/pnas.2535513100
25 https://doi.org/10.1093/bioinformatics/btm404
26 https://doi.org/10.1093/molbev/msw054
27 https://doi.org/10.1093/oxfordjournals.molbev.a040454
28 https://doi.org/10.1101/gad.204401
29 https://doi.org/10.1104/pp.106.079707
30 https://doi.org/10.1104/pp.107.111443
31 https://doi.org/10.1111/j.1365-3040.2007.01734.x
32 https://doi.org/10.1111/j.1558-5646.1985.tb00420.x
33 https://doi.org/10.1126/science.1065889
34 https://doi.org/10.1126/science.1178534
35 https://doi.org/10.1360/yc-007-1023
36 https://doi.org/10.1371/journal.pone.0044005
37 schema:datePublished 2019-02
38 schema:datePublishedReg 2019-02-01
39 schema:description The MYB-CC gene family encode proteins that harbor a combination of characteristic myeloblastosis (MYB) and coiled-coil (CC) domain structures. Some MYB-CC genes have been demonstrated to represent transcription factors regulating phosphate uptake and controlling the starvation response in plants. Despite their physiological importance, a systematic analysis of MYB-CC genes has not been reported in maize. In our study, we identified and characterized maize MYB-CC genes at whole-genome level. A total of 12 maize MYB-CC genes (ZmMYB-CC1 to ZmMYB-CC12) were identified located in six out of the 10 chromosomes of maize. Their gene structures showed similar splicing patterns and large variations of intron length. Multiple sequence alignments revealed that all MYB-CC proteins in maize shared conserved sequence cores corresponding to the MYB and CC domains, respectively. The family expanded in maize partly due to tandem and segmental duplication events. Phylogenetic analysis of MYB-CC genes indicated that the MYB-CC gene family can be divided into two subfamilies and that gene members with same functions were found in the same groups. Results provide a very useful reference for cloning and functional analysis of PHR-like genes in maize and suggest a method to predict and select appropriate candidate genes for functional genomic analysis of useful traits in crop plants.
40 schema:genre research_article
41 schema:inLanguage en
42 schema:isAccessibleForFree false
43 schema:isPartOf Nd12168c347a4410dbaee97fe41b7e4a3
44 Ne75bb784bb69487f9e39238e103df062
45 sg:journal.1017127
46 schema:name Genome-wide analysis of the MYB-CC gene family of maize
47 schema:pagination 1-9
48 schema:productId N608b10ee185545e28dc236d2679e29d7
49 N6da4b3cec37d4ec0964477991acbbcc0
50 N82d09993410c460ea35d42a78fca840a
51 N87a4478a614147a5a7485ad4246c0d3a
52 Nc62627e63787437a99030894dc7c3f9f
53 schema:sameAs https://app.dimensions.ai/details/publication/pub.1107123914
54 https://doi.org/10.1007/s10709-018-0042-y
55 schema:sdDatePublished 2019-04-11T12:54
56 schema:sdLicense https://scigraph.springernature.com/explorer/license/
57 schema:sdPublisher Nbfaef20422374d418de06eec0c3196f3
58 schema:url https://link.springer.com/10.1007%2Fs10709-018-0042-y
59 sgo:license sg:explorer/license/
60 sgo:sdDataset articles
61 rdf:type schema:ScholarlyArticle
62 N066baf4f96054fcbbb39084b85595b0e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
63 schema:name Multigene Family
64 rdf:type schema:DefinedTerm
65 N090a15f2503b42c1bf8a889320854c2d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
66 schema:name Genome, Plant
67 rdf:type schema:DefinedTerm
68 N095920bd54ab44a598eae85a7efdc03d rdf:first sg:person.01251605607.68
69 rdf:rest Na9419c6cc44a447a8865a9f56d77cf11
70 N2c0ee4c2942849bfa7e0ef7402a95e3b rdf:first sg:person.0740142103.16
71 rdf:rest N095920bd54ab44a598eae85a7efdc03d
72 N3b8b4305c7e04e69a5839217108140b7 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
73 schema:name Transcription Factors
74 rdf:type schema:DefinedTerm
75 N3c45ef2b41f24bf3897740a16fcf965f schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
76 schema:name Zea mays
77 rdf:type schema:DefinedTerm
78 N40b0dc3ab2424482975d866c81035d16 schema:name Institute of Crop Sciences, Shanxi Academy of Agricultural Sciences, 030031, Taiyuan, Shanxi, China
79 rdf:type schema:Organization
80 N608b10ee185545e28dc236d2679e29d7 schema:name doi
81 schema:value 10.1007/s10709-018-0042-y
82 rdf:type schema:PropertyValue
83 N65299512f2d64e259d01f5fe2122fa16 rdf:first sg:person.011616172650.20
84 rdf:rest N2c0ee4c2942849bfa7e0ef7402a95e3b
85 N6da4b3cec37d4ec0964477991acbbcc0 schema:name dimensions_id
86 schema:value pub.1107123914
87 rdf:type schema:PropertyValue
88 N76e4463e5d294a55bf92f32379022bc7 schema:name Institute of Crop Sciences, Shanxi Academy of Agricultural Sciences, 030031, Taiyuan, Shanxi, China
89 rdf:type schema:Organization
90 N81b1f1dbed6d435ba865633426301940 rdf:first sg:person.01142731115.72
91 rdf:rest rdf:nil
92 N82d09993410c460ea35d42a78fca840a schema:name readcube_id
93 schema:value 8a8ace7275e5a649c63208baefd6bfbd3c51b76f65e81089efa5123d619adc71
94 rdf:type schema:PropertyValue
95 N87a4478a614147a5a7485ad4246c0d3a schema:name pubmed_id
96 schema:value 30242535
97 rdf:type schema:PropertyValue
98 N8c8ee119e1a04edc8a006fda52a28ef1 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
99 schema:name Protein Domains
100 rdf:type schema:DefinedTerm
101 Na9419c6cc44a447a8865a9f56d77cf11 rdf:first sg:person.016233327144.95
102 rdf:rest Nc282df44184940139f0d386022865e78
103 Nafff519f558b4b5789fbd5801e13d962 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
104 schema:name Plant Proteins
105 rdf:type schema:DefinedTerm
106 Nb5939535af184c23b334af95e30a2916 schema:name Institute of Crop Sciences, Shanxi Academy of Agricultural Sciences, 030031, Taiyuan, Shanxi, China
107 rdf:type schema:Organization
108 Nbfaef20422374d418de06eec0c3196f3 schema:name Springer Nature - SN SciGraph project
109 rdf:type schema:Organization
110 Nc282df44184940139f0d386022865e78 rdf:first sg:person.07530255744.97
111 rdf:rest N81b1f1dbed6d435ba865633426301940
112 Nc62627e63787437a99030894dc7c3f9f schema:name nlm_unique_id
113 schema:value 0370740
114 rdf:type schema:PropertyValue
115 Nd12168c347a4410dbaee97fe41b7e4a3 schema:volumeNumber 147
116 rdf:type schema:PublicationVolume
117 Ne75bb784bb69487f9e39238e103df062 schema:issueNumber 1
118 rdf:type schema:PublicationIssue
119 Nf1273fe3239a4e92828bbddbe8e99912 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
120 schema:name Conserved Sequence
121 rdf:type schema:DefinedTerm
122 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
123 schema:name Biological Sciences
124 rdf:type schema:DefinedTerm
125 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
126 schema:name Genetics
127 rdf:type schema:DefinedTerm
128 sg:journal.1017127 schema:issn 0016-6707
129 1573-6857
130 schema:name Genetica
131 rdf:type schema:Periodical
132 sg:person.01142731115.72 schema:affiliation https://www.grid.ac/institutes/grid.35403.31
133 schema:familyName Caetano-Anollés
134 schema:givenName Gustavo
135 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01142731115.72
136 rdf:type schema:Person
137 sg:person.011616172650.20 schema:affiliation Nb5939535af184c23b334af95e30a2916
138 schema:familyName Bai
139 schema:givenName Jianrong
140 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.011616172650.20
141 rdf:type schema:Person
142 sg:person.01251605607.68 schema:affiliation https://www.grid.ac/institutes/grid.35403.31
143 schema:familyName Wang
144 schema:givenName Minglei
145 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01251605607.68
146 rdf:type schema:Person
147 sg:person.016233327144.95 schema:affiliation N40b0dc3ab2424482975d866c81035d16
148 schema:familyName Su
149 schema:givenName Liang
150 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016233327144.95
151 rdf:type schema:Person
152 sg:person.0740142103.16 schema:affiliation https://www.grid.ac/institutes/grid.434838.0
153 schema:familyName Sun
154 schema:givenName Fengjie
155 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0740142103.16
156 rdf:type schema:Person
157 sg:person.07530255744.97 schema:affiliation N76e4463e5d294a55bf92f32379022bc7
158 schema:familyName Li
159 schema:givenName Rui
160 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07530255744.97
161 rdf:type schema:Person
162 sg:pub.10.1007/s00425-009-0929-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1021451210
163 https://doi.org/10.1007/s00425-009-0929-z
164 rdf:type schema:CreativeWork
165 sg:pub.10.1007/s11033-009-9610-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044803147
166 https://doi.org/10.1007/s11033-009-9610-7
167 rdf:type schema:CreativeWork
168 sg:pub.10.1007/s11033-009-9628-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1040746195
169 https://doi.org/10.1007/s11033-009-9628-x
170 rdf:type schema:CreativeWork
171 sg:pub.10.1007/s11033-009-9691-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022505325
172 https://doi.org/10.1007/s11033-009-9691-3
173 rdf:type schema:CreativeWork
174 sg:pub.10.1007/s11033-010-0058-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041327192
175 https://doi.org/10.1007/s11033-010-0058-6
176 rdf:type schema:CreativeWork
177 sg:pub.10.1007/s11103-009-9518-6 schema:sameAs https://app.dimensions.ai/details/publication/pub.1047906478
178 https://doi.org/10.1007/s11103-009-9518-6
179 rdf:type schema:CreativeWork
180 sg:pub.10.1007/s11103-009-9537-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041690824
181 https://doi.org/10.1007/s11103-009-9537-3
182 rdf:type schema:CreativeWork
183 sg:pub.10.1007/s11103-009-9547-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032408192
184 https://doi.org/10.1007/s11103-009-9547-1
185 rdf:type schema:CreativeWork
186 sg:pub.10.1007/s11105-010-0199-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038067130
187 https://doi.org/10.1007/s11105-010-0199-8
188 rdf:type schema:CreativeWork
189 sg:pub.10.1007/s11105-012-0534-3 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007448144
190 https://doi.org/10.1007/s11105-012-0534-3
191 rdf:type schema:CreativeWork
192 sg:pub.10.1038/ng2079 schema:sameAs https://app.dimensions.ai/details/publication/pub.1000182181
193 https://doi.org/10.1038/ng2079
194 rdf:type schema:CreativeWork
195 https://app.dimensions.ai/details/publication/pub.1082919443 schema:CreativeWork
196 https://doi.org/10.1016/j.gene.2009.05.018 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033153625
197 rdf:type schema:CreativeWork
198 https://doi.org/10.1073/pnas.2535513100 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019960293
199 rdf:type schema:CreativeWork
200 https://doi.org/10.1093/bioinformatics/btm404 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007683223
201 rdf:type schema:CreativeWork
202 https://doi.org/10.1093/molbev/msw054 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012564990
203 rdf:type schema:CreativeWork
204 https://doi.org/10.1093/oxfordjournals.molbev.a040454 schema:sameAs https://app.dimensions.ai/details/publication/pub.1079752303
205 rdf:type schema:CreativeWork
206 https://doi.org/10.1101/gad.204401 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011870981
207 rdf:type schema:CreativeWork
208 https://doi.org/10.1104/pp.106.079707 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014002957
209 rdf:type schema:CreativeWork
210 https://doi.org/10.1104/pp.107.111443 schema:sameAs https://app.dimensions.ai/details/publication/pub.1054083387
211 rdf:type schema:CreativeWork
212 https://doi.org/10.1111/j.1365-3040.2007.01734.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1014961413
213 rdf:type schema:CreativeWork
214 https://doi.org/10.1111/j.1558-5646.1985.tb00420.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1085717760
215 rdf:type schema:CreativeWork
216 https://doi.org/10.1126/science.1065889 schema:sameAs https://app.dimensions.ai/details/publication/pub.1014012738
217 rdf:type schema:CreativeWork
218 https://doi.org/10.1126/science.1178534 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062460510
219 rdf:type schema:CreativeWork
220 https://doi.org/10.1360/yc-007-1023 schema:sameAs https://app.dimensions.ai/details/publication/pub.1065077939
221 rdf:type schema:CreativeWork
222 https://doi.org/10.1371/journal.pone.0044005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021272719
223 rdf:type schema:CreativeWork
224 https://www.grid.ac/institutes/grid.35403.31 schema:alternateName University of Illinois at Urbana Champaign
225 schema:name Department of Crop Sciences, University of Illinois at Urbana-Champaign, 61801, Urbana, IL, USA
226 rdf:type schema:Organization
227 https://www.grid.ac/institutes/grid.434838.0 schema:alternateName Georgia Gwinnett College
228 schema:name School of Science and Technology, Georgia Gwinnett College, 30043, Lawrenceville, GA, USA
229 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...