Genetic dissection of heading date and yield under Mediterranean dry climate in barley (Hordeum vulgare L.) View Full Text


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Article Info

DATE

2016-10-07

AUTHORS

Elahe Tavakol, Nader Elbadry, Alessandro Tondelli, Luigi Cattivelli, Laura Rossini

ABSTRACT

Understanding the genetics of drought tolerance is a major goal of plant breeders, especially in the Mediterranean region due to its sensitivity to drought and climate changes. Here we investigated genomic regions associated with heading date and yield under rainfed (R) and irrigated (I) conditions, along with some drought tolerance indices derived from phenotypic data collected on a panel of 83 European barley cultivars evaluated in field trials in Foggia, southern Italy, for three growing seasons. A genome wide association analysis (GWAS) was carried out using gene-based SNPs incorporated in the Illumina iSELECT Chip with known map position. A total of 4169 polymorphic SNPs were considered after filtering out SNPs with >10 % missing data and <10 % minimum allele frequency. Heritability was high for heading date and moderate for yield. Principle components analysis partitioned the barley germplasm in three subgroups characterized by different row-type and growth habit. A significant association with heading date was detected on chromosome 2HS, where the different alleles of associated markers were able to significantly affect heading date in different cultivars. Moreover, GWAS uncovered a significant association with yield and relative yield under R conditions on chromosome 5HS. These results provide a clue for further analysis on genetic control of barley flowering time and production in response to water stress under Mediterranean dry climate. More... »

PAGES

343-353

References to SciGraph publications

  • 2016-02-23. Genetic analysis of developmental and adaptive traits in three doubled haploid populations of barley (Hordeum vulgare L.) in THEORETICAL AND APPLIED GENETICS
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  • 2013-07-22. The advantages and limitations of trait analysis with GWAS: a review in PLANT METHODS
  • 1995-02. Localization of quantitative trait loci (QTL) for agronomic important characters by the use of a RFLP map in barley (Hordeum vulgare L.) in THEORETICAL AND APPLIED GENETICS
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  • 2012-11-18. Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley in NATURE GENETICS
  • 2014-02-06. An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley in BMC GENOMICS
  • 2011-01-09. INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1 in NATURE GENETICS
  • 2006-02-14. AB-QTL analysis in spring barley: II. Detection of favourable exotic alleles for agronomic traits introgressed from wild barley (H. vulgare ssp. spontaneum) in THEORETICAL AND APPLIED GENETICS
  • 1984-08. The chromosomal location of the dwarfing gene present in the spring barley variety golden promise in HEREDITY
  • 2015-05-22. Identification of genomic regions involved in tolerance to drought stress and drought stress induced leaf senescence in juvenile barley in BMC PLANT BIOLOGY
  • 2013-09-22. Comparative QTL analysis of early short-time drought tolerance in Polish fodder and malting spring barleys in THEORETICAL AND APPLIED GENETICS
  • 2008-07-11. Quantitative trait loci associated with adaptation to Mediterranean dryland conditions in barley in THEORETICAL AND APPLIED GENETICS
  • 2012-01-27. Genome-wide association studies for agronomical traits in a world wide spring barley collection in BMC PLANT BIOLOGY
  • 2011-09-14. Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars in THEORETICAL AND APPLIED GENETICS
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    76 genome-wide association analysis
    77 genomic regions
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    79 goal
    80 growth habit
    81 habits
    82 heritability
    83 index
    84 major goal
    85 map position
    86 markers
    87 minimum allele frequency
    88 panel
    89 phenotypic data
    90 plant breeders
    91 polymorphic SNPs
    92 position
    93 principle component analysis
    94 production
    95 rainfed
    96 region
    97 relative yield
    98 response
    99 results
    100 season
    101 sensitivity
    102 significant association
    103 southern Italy
    104 stress
    105 subgroups
    106 time
    107 tolerance
    108 tolerance index
    109 total
    110 trials
    111 water stress
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