Kinship and inbreeding estimates based on microsatellite markers in breeding of Japanese pear (Pyrus pyrifolia Nakai) View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2015-03-22

AUTHORS

Noriyuki Onoue, Masahiko Yamada, Toshiya Yamamoto, Shingo Terakami, Chikako Nishitani, Miyuki Kunihisa, Norio Takada, Sogo Nishio, Yutaka Sawamura, Toshihiro Saito

ABSTRACT

The degree of inbreeding should ideally be determined across the entire genome, but is instead widely measured using the pedigree-based coefficients of kinship (f) for pairs of individuals and of inbreeding (F) for individuals. For fruit trees, this biases the estimates for pairs of cross-parents and crossbred accessions, because f and F do not account for any latent kinship among the parents, particularly when these are local cultivars. Local cultivars are often important genetic resources but usually have an unknown pedigree. Several estimators have been developed for estimating kinship and inbreeding from DNA marker data. Among these, we selected the kinship estimator of Wang (Genet Res 89: 135; 2007) and the inbreeding estimator of Leutenegger et al. (Am J Hum Genet 73: 516; 2003), using 207 simple sequence repeat markers in 73 Japanese pear (Pyrus pyrifolia Nakai) and 3 Chinese pear (Pyrus ussuriensis Maxim.) accessions with high potential as cross-parents in breeding of Japanese pear. Pedigree-based coefficients calculated from accessions with all known great-grandparents were used to compare the performance (measured by root mean square errors and correlations) of the estimators. Most marker kinship estimates matched the expected values for parent–offspring and full-sibling pairs, and indicated latent inbreeding, especially among accessions with f = 0, including local cultivars. Marker estimators highlighted latent inbreeding early in the breeding program. The data presented here will help breeders identify the degree of inbreeding in breeding populations and avoid inbreeding during crossbreeding of Japanese pear. More... »

PAGES

539-555

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s10681-015-1427-y

DOI

http://dx.doi.org/10.1007/s10681-015-1427-y

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1041209720


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