SSR markers associated for late leaf spot disease resistance by bulked segregant analysis in groundnut (Arachis hypogaea L.) View Full Text


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Article Info

DATE

2012-06-06

AUTHORS

D. Shoba, N. Manivannan, P. Vindhiyavarman, S. N. Nigam

ABSTRACT

Late leaf spot (LLS) caused by Phaeoisariopsis personata is the major foliar disease that reduces the pod yield and severely affects the fodder and seed quality in groundnut. Molecular markers linked with LLS can improve the process of identification of resistant genotypes. In the present study, a LLS susceptible genotype (TMV 2) and the LLS resistant genotype (COG 0437) were crossed and their F2 population was used for marker analysis. The phenotypic mean data on F2:3 progenies were used as phenotype. Parents were surveyed with 77 SSR (Simple Sequence Repeat) primers to identify polymorphic markers. Among SSR markers, nine primers were found polymorphic between the parents TMV 2 and COG 0437. These markers were utilized for bulked segregant analysis (BSA). Among the polymorphic SSR markers, three primers viz., PM 375162, pPGPseq5D5220 and PM 384100 were able to distinguish the resistant and susceptible bulks and individuals for LLS. In single marker analysis, the markers PM 375, PM 384, pPGPseq5D5, PM 137, PM 3, PMc 588 and Ah 4-26 were linked with LLS severity score. The phenotypic variation explained by these markers ranged from 32 to 59 %. The markers identified through BSA were also confirmed with single marker analysis. While validating the three primers over a set of resistant and susceptible genotypes, the primer PM 384100 allele had association with resistance. Hence PM 384 could be utilized in the marker assisted breeding programme over a wide range of genetic background. More... »

PAGES

265-272

References to SciGraph publications

  • 2002-05. Components of resistance to late leaf spot and rust among interspecific derivatives and their significance in a foliar disease resistance breeding in groundnut (Arachis hypogaea L.) in EUPHYTICA
  • 2001-08. Evaluation of genetic relationships among botanical varieties of cultivated peanut (Arachis hypogaea L.) using AFLP markers in GENETIC RESOURCES AND CROP EVOLUTION
  • 1998-04. Genetic variation vis-à-vis molecular polymorphism in groundnut, Arachis hypogaea L. in GENETIC RESOURCES AND CROP EVOLUTION
  • 2003-02-28. Genetic effects on microsatellite diversity in wild emmer wheat (Triticum dicoccoides) at the Yehudiyya microsite, Israel in HEREDITY
  • 2007-07-13. RAPD markers linked to a rust resistance gene in cultivated groundnut (Arachis hypogaea L.) in EUPHYTICA
  • 2009-08-22. Identification of candidate genome regions controlling disease resistance in Arachis in BMC PLANT BIOLOGY
  • 2005-01. An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: The basic concepts in EUPHYTICA
  • 2007-01-01. Molecular Genetics and Breeding of Grain Legume Crops for the Semi-Arid Tropics in GENOMICS-ASSISTED CROP IMPROVEMENT
  • 2006-11-23. SSR analysis of cultivated groundnut (Arachis hypogaea L.) germplasm resistant to rust and late leaf spot diseases in EUPHYTICA
  • 1986-12. Diallel and generation means analyses for the components of resistance to Cercospora arachidicola in peanut in THEORETICAL AND APPLIED GENETICS
  • 1994-06. Assessment of DNA pooling strategies for mapping of QTLs in THEORETICAL AND APPLIED GENETICS
  • 1978-10. Estimates of leafspot resistance in three interspecific hybrids of Arachis in EUPHYTICA
  • 2007-06-28. A DArT platform for quantitative bulked segregant analysis in BMC GENOMICS
  • 2002-10-22. The development of multiplex simple sequence repeat (SSR) markers to complement distinctness, uniformity and stability testing of rape (Brassica napus L.) varieties in THEORETICAL AND APPLIED GENETICS
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