A new citrus linkage map based on SRAP, SSR, ISSR, POGP, RGA and RAPD markers View Full Text


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Article Info

DATE

2010-05

AUTHORS

Osman Gulsen, Aydin Uzun, Ihsan Canan, Ubeyit Seday, Ercan Canihos

ABSTRACT

Sequence-related amplified polymorphism (SRAP), simple sequence repeats (SSR), inter-simple sequence repeat (ISSR), peroxidase gene polymorphism (POGP), resistant gene analog (RGA), randomly amplified polymorphic DNA (RAPD), and a morphological marker, Alternaria brown spot resistance gene of citrus named as Cabsr caused by (Alternaria alternata f. sp. Citri) were used to establish genetic linkage map of citrus using a population of 164 F1 individuals derived between ‘Clementine’ mandarin (Citrus reticulata Blanco ‘Clementine) and ‘Orlando’ tangelo’ (C. paradisi Macf. ‘Duncan’ × C. reticulata Blanco ‘Dancy’). A total of 609 markers, including 385 SRAP, 97 RAPD, 95 SSR, 18 ISSR, 12 POGP, and 2 RGA markers were used in linkage analysis. The ‘Clementine’ linkage map has 215 markers, comprising 144 testcross and 71 intercross markers placed in nine linkage groups. The ‘Clementine’ linkage map covered 858 cM with and average map distance of 3.5 cM between adjacent markers. The ‘Orlando’ linkage map has 189 markers, comprising 126 testcross and 61 intercross markers placed in nine linkage groups. The ‘Orlando’ linkage map covered 886 cM with an average map distance of 3.9 cM between adjacent markers. Segregation ratios for Cabsr were not significantly different from 1:1, suggesting that this trait is controlled by a single locus. This locus was placed in ‘Orlando’ linkage group 1. The new map has an improved distribution of markers along the linkage groups with fewer gaps. Combining different marker systems in linkage mapping studies may give better genome coverage due to their chromosomal target site differences, therefore fewer gaps in linkage groups. More... »

PAGES

265-277

References to SciGraph publications

  • 2001-08. Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica in THEORETICAL AND APPLIED GENETICS
  • 1994-11. Molecular genetics of growth and development in Populus. II. Segregation distortion due to genetic load in THEORETICAL AND APPLIED GENETICS
  • 2007-09. Development of genetic maps of the citrus varieties ‘Murcott’ tangor and ‘Pêra’ sweet orange by using fluorescent AFLP markers in JOURNAL OF APPLIED GENETICS
  • 1997-04. Integration of trinucleotide microsatellites into a linkage map of Citrus in THEORETICAL AND APPLIED GENETICS
  • 2003-03. Comparison between Poncirus and Citrus genetic linkage maps in THEORETICAL AND APPLIED GENETICS
  • 2004-10. A genetic linkage map of grape, utilizing Vitis rupestris and Vitis arizonica in THEORETICAL AND APPLIED GENETICS
  • 1997-08. Identification of closely related citrus cultivars with inter-simple sequence repeat markers in THEORETICAL AND APPLIED GENETICS
  • 1992-06. A genetic map of citrus based on the segregation of isozymes and RFLPs in an intergeneric cross in THEORETICAL AND APPLIED GENETICS
  • 2000-06. Citrus phylogeny and genetic origin of important species as investigated by molecular markers in THEORETICAL AND APPLIED GENETICS
  • 2008-01. EST-SSR genetic maps for Citrus sinensis and Poncirus trifoliata in TREE GENETICS & GENOMES
  • 2001-02. Evaluation of inter-simple sequence repeat analysis for mapping in Citrus and extension of the genetic linkage map in THEORETICAL AND APPLIED GENETICS
  • 2000-10. Cloning and characterization of NBS-LRR class resistance-gene candidate sequences in citrus in THEORETICAL AND APPLIED GENETICS
  • 2000-08. QTL analysis of yield and seed number in Citrus in THEORETICAL AND APPLIED GENETICS
  • 2001-02. A Survey of the Molecular Evolutionary Dynamics of Twenty-Five Multigene Families from Four Grass Taxa in JOURNAL OF MOLECULAR EVOLUTION
  • 2006-05. Assessing genetic diversity and population structure in a citrus germplasm collection utilizing simple sequence repeat markers (SSRs) in THEORETICAL AND APPLIED GENETICS
  • Journal

    TITLE

    Euphytica

    ISSUE

    2

    VOLUME

    173

    Author Affiliations

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s10681-010-0146-7

    DOI

    http://dx.doi.org/10.1007/s10681-010-0146-7

    DIMENSIONS

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