Genetic organization of aromatic rice as revealed by RAPD markers: A case study in conserving crop genetic resources on farm View Full Text


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Article Info

DATE

2006-05

AUTHORS

Shuichi Fukuoka, Suu D Tran, Kaworu Ebana, Trinh N Luu, Tsukasa Nagamine, Kazutoshi Okuno

ABSTRACT

On-farm conservation of landraces is one strategy to maintain the diversity of crop germplasm in local agro-ecosystems. The genetic structures of landraces are a key biological factor in on-farm conservation strategies. To accumulate a genetic understanding that will help establish a methodology for on-farm conservation, the genetic organization of landraces of aromatic rice in Namdinh province, Vietnam was analyzed using RAPD markers. Eighteen RAPD markers detected 38 genotypes among 320 aromatic rice samples growing at 23 sites of farmers' fields and in the experimental field that derived from 13 sites. Geographical variation was observed in the frequency of genotypes, whereas individual landraces could not be distinguished by RAPD markers. Genetic variation within a site was generally smaller than that among sites. The degree of genetic similarity of the plants in a site varied among sites, as did the number of genotypes. Changes in genetic structure over time were investigated using experimental populations each derived from approximately 30 plants from 13 farmers' fields. The differences detected by DNA markers between the genetic structural in the farmers' fields and those in experimental fields suggested that genetic drift is a major cause of these differences. The present study suggests that DNA markers are an essential means to monitor the genetic structures of heterogeneous landraces of rice, and are useful for selecting study sites for the on-farm conservation of genetic diversity as well as for successive monitoring. More... »

PAGES

61-71

References to SciGraph publications

  • 1997-03. Genetic characterization of weedy rice (Oryza sativa L.) based on morpho-physiology, isozymes and RAPD markers in THEORETICAL AND APPLIED GENETICS
  • 1999-12. The genetic structure and conservation of aus, aman and boro rices from Bangladesh in GENETIC RESOURCES AND CROP EVOLUTION
  • 2000. Complementary conservation strategies in PLANT GENETIC CONSERVATION
  • 1997. Plant Genetic Conservation, The in situ approach in NONE
  • 2002-02. Naming of traditional rice varieties by farmers in the Lao PDR in GENETIC RESOURCES AND CROP EVOLUTION
  • 1999-06. RAPD variation within and between natural populations of the wild rice Oryza rufipogon from China and Brazil in HEREDITY
  • 2001-12. Diversity and adaptation in rice varieties under static (ex situ) and dynamic (in situ) management in EUPHYTICA
  • 2002-04. Genetic diversity within a range of cultivars and landraces of flax (Linum usitatissimum L.) as revealed by RAPDs in GENETIC RESOURCES AND CROP EVOLUTION
  • 1998-12. Population genetic structure in Lens taxa revealed by isozyme and RAPD analysis in GENETIC RESOURCES AND CROP EVOLUTION
  • 2002-08. Climatic effects on microsatellite diversity in wild emmer wheat (Triticum dicoccoides) at the Yehudiyya microsite, Israel in HEREDITY
  • 1994-01. Genetic variation detected with RAPD markers among upland and lowland rice cultivars (Oryza sativa L.) in THEORETICAL AND APPLIED GENETICS
  • 1995-12. Genetic diversity in populations of Cronartium ribicola in plantations and natural stands of Pinus strobus in THEORETICAL AND APPLIED GENETICS
  • 1987-01. In situ conservation of crop genetic resources through maintenance of traditional farming systems in ECONOMIC BOTANY
  • 2003-06. Genetic diversity in sweetpotato [Ipomoea batatas (L.) Lam.] in relationship to geographic sources as assessed with RAPD markers in GENETIC RESOURCES AND CROP EVOLUTION
  • 2002-02. Towards a methodology for on-farm conservation of plant genetic resources in GENETIC RESOURCES AND CROP EVOLUTION
  • Journal

    TITLE

    Euphytica

    ISSUE

    1-2

    VOLUME

    149

    Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s10681-005-9054-7

    DOI

    http://dx.doi.org/10.1007/s10681-005-9054-7

    DIMENSIONS

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