Distribution of CR1-like transposable element in woodpeckers (Aves Piciformes): Z sex chromosomes can act as a refuge for transposable elements View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2018-12

AUTHORS

Natasha Avila Bertocchi, Thays Duarte de Oliveira, Analía del Valle Garnero, Rafael Luiz Buogo Coan, Ricardo José Gunski, Cesar Martins, Fabiano Pimentel Torres

ABSTRACT

Birds have relatively few repetitive sequences compared to other groups of vertebrates; however, the members of order Piciformes (woodpeckers) have more of these sequences, composed mainly of transposable elements (TE). The TE most often found in birds is a retrotransposon chicken repeat 1 (CR1). Piciformes lineages were subjected to an expansion of the CR1 elements, carrying a larger fraction of transposable elements. This study compared patterns of chromosome distribution among five bird species, through chromosome mapping of the CR1 sequence and reconstructed their phylogenetic tree. We analyzed several members of Piciformes (Colaptes campestris, Colaptes melanochloros, Melanerpes candidus, and Veniliornis spilogaster), as well as Galliformes (Gallus gallus). Gallus gallus is the species with which most genomic and hence cytogenetic studies have been performed. The results showed that CR1 sequences are a monophyletic group and do not depend on their hosts. All species analyzed showed a hybridization signal by fluorescence in situ hybridization (FISH). In all species, the chromosomal distribution of CR1 was not restricted to heterochromatin regions in the macrochromosomes, principally pair 1 and the Z sex chromosome. Accumulation in the Z sex chromosomes can serve as a refuge for transposable elements. These results highlight the importance of transposable elements in host genomes and karyotype evolution. More... »

PAGES

333-343

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s10577-018-9592-1

DOI

http://dx.doi.org/10.1007/s10577-018-9592-1

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1110269586

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/30499043


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Federal University of Rio Grande do Sul", 
          "id": "https://www.grid.ac/institutes/grid.8532.c", 
          "name": [
            "Programa de P\u00f3s-gradua\u00e7\u00e3o em Gen\u00e9tica e Biologia Molecular, Universidade Federal do Rio Grande do Sul (UFRGS), 91501-970, Porto Alegre, Rio Grande do Sul, Brazil"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Bertocchi", 
        "givenName": "Natasha Avila", 
        "id": "sg:person.016466413733.23", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016466413733.23"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Federal University of Rio Grande do Sul", 
          "id": "https://www.grid.ac/institutes/grid.8532.c", 
          "name": [
            "Programa de P\u00f3s-gradua\u00e7\u00e3o em Biologia Animal, Universidade Federal do Rio Grande do Sul (UFRGS), 91540-000, Porto Alegre, Rio Grande do Sul, Brazil"
          ], 
          "type": "Organization"
        }, 
        "familyName": "de Oliveira", 
        "givenName": "Thays Duarte", 
        "id": "sg:person.015073452733.64", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015073452733.64"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Universidade Federal do Pampa", 
          "id": "https://www.grid.ac/institutes/grid.412376.5", 
          "name": [
            "Programa de P\u00f3s-gradua\u00e7\u00e3o em Ci\u00eancias Biol\u00f3gicas, Universidade Federal do Pampa (Unipampa), 97300-000, S\u00e3o Gabriel, Rio Grande do Sul, Brazil", 
            "Laborat\u00f3rio de Diversidade Gen\u00e9tica Animal, Universidade Federal do Pampa (Unipampa), 97300-000, S\u00e3o Gabriel, Rio Grande do Sul, Brazil"
          ], 
          "type": "Organization"
        }, 
        "familyName": "del Valle Garnero", 
        "givenName": "Anal\u00eda", 
        "id": "sg:person.0736674573.65", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0736674573.65"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Sao Paulo State University", 
          "id": "https://www.grid.ac/institutes/grid.410543.7", 
          "name": [
            "Departamento de Morfologia, Laborat\u00f3rio Gen\u00f4mica Integrativa, Universidade Estadual Paulista (UNESP), 18618-689, Botucatu, S\u00e3o Paulo, Brazil"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Coan", 
        "givenName": "Rafael Luiz Buogo", 
        "id": "sg:person.014371574547.09", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014371574547.09"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Universidade Federal do Pampa", 
          "id": "https://www.grid.ac/institutes/grid.412376.5", 
          "name": [
            "Programa de P\u00f3s-gradua\u00e7\u00e3o em Ci\u00eancias Biol\u00f3gicas, Universidade Federal do Pampa (Unipampa), 97300-000, S\u00e3o Gabriel, Rio Grande do Sul, Brazil", 
            "Laborat\u00f3rio de Diversidade Gen\u00e9tica Animal, Universidade Federal do Pampa (Unipampa), 97300-000, S\u00e3o Gabriel, Rio Grande do Sul, Brazil"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gunski", 
        "givenName": "Ricardo Jos\u00e9", 
        "id": "sg:person.0661511100.61", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0661511100.61"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Sao Paulo State University", 
          "id": "https://www.grid.ac/institutes/grid.410543.7", 
          "name": [
            "Departamento de Morfologia, Laborat\u00f3rio Gen\u00f4mica Integrativa, Universidade Estadual Paulista (UNESP), 18618-689, Botucatu, S\u00e3o Paulo, Brazil"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Martins", 
        "givenName": "Cesar", 
        "id": "sg:person.0675502047.27", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0675502047.27"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Universidade Federal do Pampa", 
          "id": "https://www.grid.ac/institutes/grid.412376.5", 
          "name": [
            "Programa de P\u00f3s-gradua\u00e7\u00e3o em Ci\u00eancias Biol\u00f3gicas, Universidade Federal do Pampa (Unipampa), 97300-000, S\u00e3o Gabriel, Rio Grande do Sul, Brazil", 
            "Laborat\u00f3rio de Diversidade Gen\u00e9tica Animal, Universidade Federal do Pampa (Unipampa), 97300-000, S\u00e3o Gabriel, Rio Grande do Sul, Brazil"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Torres", 
        "givenName": "Fabiano Pimentel", 
        "id": "sg:person.015503564107.01", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015503564107.01"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1016/0014-4827(72)90558-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002246289"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1111/nyas.13295", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002724756"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0378-1119(97)00276-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1002837664"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.89.16.7591", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1005699547"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/377391a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007341315", 
          "https://doi.org/10.1038/377391a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1371/journal.pone.0169987", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011236221"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/msw054", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012564990"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00239-015-9692-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014473713", 
          "https://doi.org/10.1007/s00239-015-9692-x"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/sj.hdy.6800697", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015541573", 
          "https://doi.org/10.1038/sj.hdy.6800697"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/sj.hdy.6800697", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015541573", 
          "https://doi.org/10.1038/sj.hdy.6800697"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/sj.hdy.6800697", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015541573", 
          "https://doi.org/10.1038/sj.hdy.6800697"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/sj.hdy.6800697", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1015541573", 
          "https://doi.org/10.1038/sj.hdy.6800697"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/gbe/evu256", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1020956256"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1755-8166-6-51", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021955270", 
          "https://doi.org/10.1186/1755-8166-6-51"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/9.20.5383", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1022750827"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/gr.3543605", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026097919"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1254449", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026601540"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1159/000130294", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027382827"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.1251385", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028639556"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/371215a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028852240", 
          "https://doi.org/10.1038/371215a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1073/pnas.90.17.8199", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1030696766"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/msg011", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1032457975"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1159/000078570", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1034241686"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s10577-005-1004-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036412333", 
          "https://doi.org/10.1007/s10577-005-1004-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s10577-005-1004-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1036412333", 
          "https://doi.org/10.1007/s10577-005-1004-7"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/btp324", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1038266369"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1186/1759-8753-5-13", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1039453555", 
          "https://doi.org/10.1186/1759-8753-5-13"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/bioinformatics/bts091", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1040893819"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/ncomms1448", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1041230826", 
          "https://doi.org/10.1038/ncomms1448"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1159/000084979", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044099907"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1159/000084979", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044099907"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/mst010", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1045545793"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf02146680", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048045066", 
          "https://doi.org/10.1007/bf02146680"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature02426", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048338096", 
          "https://doi.org/10.1038/nature02426"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature02426", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048338096", 
          "https://doi.org/10.1038/nature02426"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/nature02426", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048338096", 
          "https://doi.org/10.1038/nature02426"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/oxfordjournals.molbev.a025730", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049983583"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.tig.2004.09.011", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1051263634"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0378-1119(01)00344-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052540940"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00412-015-0531-z", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1052942348", 
          "https://doi.org/10.1007/s00412-015-0531-z"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/10635150601052637", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1058369647"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1101/gr.2438005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060407528"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s10577-017-9569-5", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1100394337", 
          "https://doi.org/10.1007/s10577-017-9569-5"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.3390/genes9040181", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1101769157"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/gbe/evy105", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1104201779"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2018-12", 
    "datePublishedReg": "2018-12-01", 
    "description": "Birds have relatively few repetitive sequences compared to other groups of vertebrates; however, the members of order Piciformes (woodpeckers) have more of these sequences, composed mainly of transposable elements (TE). The TE most often found in birds is a retrotransposon chicken repeat 1 (CR1). Piciformes lineages were subjected to an expansion of the CR1 elements, carrying a larger fraction of transposable elements. This study compared patterns of chromosome distribution among five bird species, through chromosome mapping of the CR1 sequence and reconstructed their phylogenetic tree. We analyzed several members of Piciformes (Colaptes campestris, Colaptes melanochloros, Melanerpes candidus, and Veniliornis spilogaster), as well as Galliformes (Gallus gallus). Gallus gallus is the species with which most genomic and hence cytogenetic studies have been performed. The results showed that CR1 sequences are a monophyletic group and do not depend on their hosts. All species analyzed showed a hybridization signal by fluorescence in situ hybridization (FISH). In all species, the chromosomal distribution of CR1 was not restricted to heterochromatin regions in the macrochromosomes, principally pair 1 and the Z sex chromosome. Accumulation in the Z sex chromosomes can serve as a refuge for transposable elements. These results highlight the importance of transposable elements in host genomes and karyotype evolution.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s10577-018-9592-1", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1104385", 
        "issn": [
          "0967-3849", 
          "1573-6849"
        ], 
        "name": "Chromosome Research", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "4", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "26"
      }
    ], 
    "name": "Distribution of CR1-like transposable element in woodpeckers (Aves Piciformes): Z sex chromosomes can act as a refuge for transposable elements", 
    "pagination": "333-343", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "6edac1db8de23b50a4c935e83d1575a70670d11703b12513cb535e18fd824fef"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "30499043"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "9313452"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s10577-018-9592-1"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1110269586"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s10577-018-9592-1", 
      "https://app.dimensions.ai/details/publication/pub.1110269586"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T10:58", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000352_0000000352/records_60333_00000003.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://link.springer.com/10.1007%2Fs10577-018-9592-1"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s10577-018-9592-1'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s10577-018-9592-1'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s10577-018-9592-1'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s10577-018-9592-1'


 

This table displays all metadata directly associated to this object as RDF triples.

245 TRIPLES      21 PREDICATES      67 URIs      21 LITERALS      9 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s10577-018-9592-1 schema:about anzsrc-for:06
2 anzsrc-for:0604
3 schema:author Nedc6a00da36c40d1aaf8070f204f87ac
4 schema:citation sg:pub.10.1007/bf02146680
5 sg:pub.10.1007/s00239-015-9692-x
6 sg:pub.10.1007/s00412-015-0531-z
7 sg:pub.10.1007/s10577-005-1004-7
8 sg:pub.10.1007/s10577-017-9569-5
9 sg:pub.10.1038/371215a0
10 sg:pub.10.1038/377391a0
11 sg:pub.10.1038/nature02426
12 sg:pub.10.1038/ncomms1448
13 sg:pub.10.1038/sj.hdy.6800697
14 sg:pub.10.1186/1755-8166-6-51
15 sg:pub.10.1186/1759-8753-5-13
16 https://doi.org/10.1016/0014-4827(72)90558-7
17 https://doi.org/10.1016/j.tig.2004.09.011
18 https://doi.org/10.1016/s0378-1119(01)00344-4
19 https://doi.org/10.1016/s0378-1119(97)00276-x
20 https://doi.org/10.1073/pnas.89.16.7591
21 https://doi.org/10.1073/pnas.90.17.8199
22 https://doi.org/10.1080/10635150601052637
23 https://doi.org/10.1093/bioinformatics/btp324
24 https://doi.org/10.1093/bioinformatics/bts091
25 https://doi.org/10.1093/gbe/evu256
26 https://doi.org/10.1093/gbe/evy105
27 https://doi.org/10.1093/molbev/msg011
28 https://doi.org/10.1093/molbev/mst010
29 https://doi.org/10.1093/molbev/msw054
30 https://doi.org/10.1093/nar/9.20.5383
31 https://doi.org/10.1093/oxfordjournals.molbev.a025730
32 https://doi.org/10.1101/gr.2438005
33 https://doi.org/10.1101/gr.3543605
34 https://doi.org/10.1111/nyas.13295
35 https://doi.org/10.1126/science.1251385
36 https://doi.org/10.1126/science.1254449
37 https://doi.org/10.1159/000078570
38 https://doi.org/10.1159/000084979
39 https://doi.org/10.1159/000130294
40 https://doi.org/10.1371/journal.pone.0169987
41 https://doi.org/10.3390/genes9040181
42 schema:datePublished 2018-12
43 schema:datePublishedReg 2018-12-01
44 schema:description Birds have relatively few repetitive sequences compared to other groups of vertebrates; however, the members of order Piciformes (woodpeckers) have more of these sequences, composed mainly of transposable elements (TE). The TE most often found in birds is a retrotransposon chicken repeat 1 (CR1). Piciformes lineages were subjected to an expansion of the CR1 elements, carrying a larger fraction of transposable elements. This study compared patterns of chromosome distribution among five bird species, through chromosome mapping of the CR1 sequence and reconstructed their phylogenetic tree. We analyzed several members of Piciformes (Colaptes campestris, Colaptes melanochloros, Melanerpes candidus, and Veniliornis spilogaster), as well as Galliformes (Gallus gallus). Gallus gallus is the species with which most genomic and hence cytogenetic studies have been performed. The results showed that CR1 sequences are a monophyletic group and do not depend on their hosts. All species analyzed showed a hybridization signal by fluorescence in situ hybridization (FISH). In all species, the chromosomal distribution of CR1 was not restricted to heterochromatin regions in the macrochromosomes, principally pair 1 and the Z sex chromosome. Accumulation in the Z sex chromosomes can serve as a refuge for transposable elements. These results highlight the importance of transposable elements in host genomes and karyotype evolution.
45 schema:genre research_article
46 schema:inLanguage en
47 schema:isAccessibleForFree false
48 schema:isPartOf N537db5e2478440268c31c6cf4e8ff391
49 N81f7b076c95d4d878833bd61680e0bef
50 sg:journal.1104385
51 schema:name Distribution of CR1-like transposable element in woodpeckers (Aves Piciformes): Z sex chromosomes can act as a refuge for transposable elements
52 schema:pagination 333-343
53 schema:productId N5b6d5cb60a904749940d85bbb347689c
54 N8c9a5717fc0c493e97dc81d43e9a7b9c
55 Nafa11ad2f22d4d0c936fe8b40120e790
56 Nb8e2f9f292b44e9db6774d3912b8c537
57 Nd6f831d428bb4ce3891f4950644e4f64
58 schema:sameAs https://app.dimensions.ai/details/publication/pub.1110269586
59 https://doi.org/10.1007/s10577-018-9592-1
60 schema:sdDatePublished 2019-04-11T10:58
61 schema:sdLicense https://scigraph.springernature.com/explorer/license/
62 schema:sdPublisher Nc7c80974fa514cb083bdc6b68632552e
63 schema:url https://link.springer.com/10.1007%2Fs10577-018-9592-1
64 sgo:license sg:explorer/license/
65 sgo:sdDataset articles
66 rdf:type schema:ScholarlyArticle
67 N14e2a39c3ea146b8886beb9f203ec6a6 rdf:first sg:person.014371574547.09
68 rdf:rest N4efa9bb578b04394ae0ce55c9aef274a
69 N27a620c9c7da4264981296192ed1de19 rdf:first sg:person.015073452733.64
70 rdf:rest Neec69f4eea3e45baa1d87da456e7a728
71 N31b9561316f04ac29278094d2bcfdcc6 rdf:first sg:person.015503564107.01
72 rdf:rest rdf:nil
73 N4efa9bb578b04394ae0ce55c9aef274a rdf:first sg:person.0661511100.61
74 rdf:rest Nc4f109a7d87f4fef816b3cd89e4471a7
75 N537db5e2478440268c31c6cf4e8ff391 schema:issueNumber 4
76 rdf:type schema:PublicationIssue
77 N5b6d5cb60a904749940d85bbb347689c schema:name nlm_unique_id
78 schema:value 9313452
79 rdf:type schema:PropertyValue
80 N81f7b076c95d4d878833bd61680e0bef schema:volumeNumber 26
81 rdf:type schema:PublicationVolume
82 N8c9a5717fc0c493e97dc81d43e9a7b9c schema:name doi
83 schema:value 10.1007/s10577-018-9592-1
84 rdf:type schema:PropertyValue
85 Nafa11ad2f22d4d0c936fe8b40120e790 schema:name dimensions_id
86 schema:value pub.1110269586
87 rdf:type schema:PropertyValue
88 Nb8e2f9f292b44e9db6774d3912b8c537 schema:name pubmed_id
89 schema:value 30499043
90 rdf:type schema:PropertyValue
91 Nc4f109a7d87f4fef816b3cd89e4471a7 rdf:first sg:person.0675502047.27
92 rdf:rest N31b9561316f04ac29278094d2bcfdcc6
93 Nc7c80974fa514cb083bdc6b68632552e schema:name Springer Nature - SN SciGraph project
94 rdf:type schema:Organization
95 Nd6f831d428bb4ce3891f4950644e4f64 schema:name readcube_id
96 schema:value 6edac1db8de23b50a4c935e83d1575a70670d11703b12513cb535e18fd824fef
97 rdf:type schema:PropertyValue
98 Nedc6a00da36c40d1aaf8070f204f87ac rdf:first sg:person.016466413733.23
99 rdf:rest N27a620c9c7da4264981296192ed1de19
100 Neec69f4eea3e45baa1d87da456e7a728 rdf:first sg:person.0736674573.65
101 rdf:rest N14e2a39c3ea146b8886beb9f203ec6a6
102 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
103 schema:name Biological Sciences
104 rdf:type schema:DefinedTerm
105 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
106 schema:name Genetics
107 rdf:type schema:DefinedTerm
108 sg:journal.1104385 schema:issn 0967-3849
109 1573-6849
110 schema:name Chromosome Research
111 rdf:type schema:Periodical
112 sg:person.014371574547.09 schema:affiliation https://www.grid.ac/institutes/grid.410543.7
113 schema:familyName Coan
114 schema:givenName Rafael Luiz Buogo
115 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014371574547.09
116 rdf:type schema:Person
117 sg:person.015073452733.64 schema:affiliation https://www.grid.ac/institutes/grid.8532.c
118 schema:familyName de Oliveira
119 schema:givenName Thays Duarte
120 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015073452733.64
121 rdf:type schema:Person
122 sg:person.015503564107.01 schema:affiliation https://www.grid.ac/institutes/grid.412376.5
123 schema:familyName Torres
124 schema:givenName Fabiano Pimentel
125 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015503564107.01
126 rdf:type schema:Person
127 sg:person.016466413733.23 schema:affiliation https://www.grid.ac/institutes/grid.8532.c
128 schema:familyName Bertocchi
129 schema:givenName Natasha Avila
130 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016466413733.23
131 rdf:type schema:Person
132 sg:person.0661511100.61 schema:affiliation https://www.grid.ac/institutes/grid.412376.5
133 schema:familyName Gunski
134 schema:givenName Ricardo José
135 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0661511100.61
136 rdf:type schema:Person
137 sg:person.0675502047.27 schema:affiliation https://www.grid.ac/institutes/grid.410543.7
138 schema:familyName Martins
139 schema:givenName Cesar
140 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0675502047.27
141 rdf:type schema:Person
142 sg:person.0736674573.65 schema:affiliation https://www.grid.ac/institutes/grid.412376.5
143 schema:familyName del Valle Garnero
144 schema:givenName Analía
145 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0736674573.65
146 rdf:type schema:Person
147 sg:pub.10.1007/bf02146680 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048045066
148 https://doi.org/10.1007/bf02146680
149 rdf:type schema:CreativeWork
150 sg:pub.10.1007/s00239-015-9692-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1014473713
151 https://doi.org/10.1007/s00239-015-9692-x
152 rdf:type schema:CreativeWork
153 sg:pub.10.1007/s00412-015-0531-z schema:sameAs https://app.dimensions.ai/details/publication/pub.1052942348
154 https://doi.org/10.1007/s00412-015-0531-z
155 rdf:type schema:CreativeWork
156 sg:pub.10.1007/s10577-005-1004-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1036412333
157 https://doi.org/10.1007/s10577-005-1004-7
158 rdf:type schema:CreativeWork
159 sg:pub.10.1007/s10577-017-9569-5 schema:sameAs https://app.dimensions.ai/details/publication/pub.1100394337
160 https://doi.org/10.1007/s10577-017-9569-5
161 rdf:type schema:CreativeWork
162 sg:pub.10.1038/371215a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028852240
163 https://doi.org/10.1038/371215a0
164 rdf:type schema:CreativeWork
165 sg:pub.10.1038/377391a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007341315
166 https://doi.org/10.1038/377391a0
167 rdf:type schema:CreativeWork
168 sg:pub.10.1038/nature02426 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048338096
169 https://doi.org/10.1038/nature02426
170 rdf:type schema:CreativeWork
171 sg:pub.10.1038/ncomms1448 schema:sameAs https://app.dimensions.ai/details/publication/pub.1041230826
172 https://doi.org/10.1038/ncomms1448
173 rdf:type schema:CreativeWork
174 sg:pub.10.1038/sj.hdy.6800697 schema:sameAs https://app.dimensions.ai/details/publication/pub.1015541573
175 https://doi.org/10.1038/sj.hdy.6800697
176 rdf:type schema:CreativeWork
177 sg:pub.10.1186/1755-8166-6-51 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021955270
178 https://doi.org/10.1186/1755-8166-6-51
179 rdf:type schema:CreativeWork
180 sg:pub.10.1186/1759-8753-5-13 schema:sameAs https://app.dimensions.ai/details/publication/pub.1039453555
181 https://doi.org/10.1186/1759-8753-5-13
182 rdf:type schema:CreativeWork
183 https://doi.org/10.1016/0014-4827(72)90558-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002246289
184 rdf:type schema:CreativeWork
185 https://doi.org/10.1016/j.tig.2004.09.011 schema:sameAs https://app.dimensions.ai/details/publication/pub.1051263634
186 rdf:type schema:CreativeWork
187 https://doi.org/10.1016/s0378-1119(01)00344-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1052540940
188 rdf:type schema:CreativeWork
189 https://doi.org/10.1016/s0378-1119(97)00276-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1002837664
190 rdf:type schema:CreativeWork
191 https://doi.org/10.1073/pnas.89.16.7591 schema:sameAs https://app.dimensions.ai/details/publication/pub.1005699547
192 rdf:type schema:CreativeWork
193 https://doi.org/10.1073/pnas.90.17.8199 schema:sameAs https://app.dimensions.ai/details/publication/pub.1030696766
194 rdf:type schema:CreativeWork
195 https://doi.org/10.1080/10635150601052637 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058369647
196 rdf:type schema:CreativeWork
197 https://doi.org/10.1093/bioinformatics/btp324 schema:sameAs https://app.dimensions.ai/details/publication/pub.1038266369
198 rdf:type schema:CreativeWork
199 https://doi.org/10.1093/bioinformatics/bts091 schema:sameAs https://app.dimensions.ai/details/publication/pub.1040893819
200 rdf:type schema:CreativeWork
201 https://doi.org/10.1093/gbe/evu256 schema:sameAs https://app.dimensions.ai/details/publication/pub.1020956256
202 rdf:type schema:CreativeWork
203 https://doi.org/10.1093/gbe/evy105 schema:sameAs https://app.dimensions.ai/details/publication/pub.1104201779
204 rdf:type schema:CreativeWork
205 https://doi.org/10.1093/molbev/msg011 schema:sameAs https://app.dimensions.ai/details/publication/pub.1032457975
206 rdf:type schema:CreativeWork
207 https://doi.org/10.1093/molbev/mst010 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045545793
208 rdf:type schema:CreativeWork
209 https://doi.org/10.1093/molbev/msw054 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012564990
210 rdf:type schema:CreativeWork
211 https://doi.org/10.1093/nar/9.20.5383 schema:sameAs https://app.dimensions.ai/details/publication/pub.1022750827
212 rdf:type schema:CreativeWork
213 https://doi.org/10.1093/oxfordjournals.molbev.a025730 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049983583
214 rdf:type schema:CreativeWork
215 https://doi.org/10.1101/gr.2438005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060407528
216 rdf:type schema:CreativeWork
217 https://doi.org/10.1101/gr.3543605 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026097919
218 rdf:type schema:CreativeWork
219 https://doi.org/10.1111/nyas.13295 schema:sameAs https://app.dimensions.ai/details/publication/pub.1002724756
220 rdf:type schema:CreativeWork
221 https://doi.org/10.1126/science.1251385 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028639556
222 rdf:type schema:CreativeWork
223 https://doi.org/10.1126/science.1254449 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026601540
224 rdf:type schema:CreativeWork
225 https://doi.org/10.1159/000078570 schema:sameAs https://app.dimensions.ai/details/publication/pub.1034241686
226 rdf:type schema:CreativeWork
227 https://doi.org/10.1159/000084979 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044099907
228 rdf:type schema:CreativeWork
229 https://doi.org/10.1159/000130294 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027382827
230 rdf:type schema:CreativeWork
231 https://doi.org/10.1371/journal.pone.0169987 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011236221
232 rdf:type schema:CreativeWork
233 https://doi.org/10.3390/genes9040181 schema:sameAs https://app.dimensions.ai/details/publication/pub.1101769157
234 rdf:type schema:CreativeWork
235 https://www.grid.ac/institutes/grid.410543.7 schema:alternateName Sao Paulo State University
236 schema:name Departamento de Morfologia, Laboratório Genômica Integrativa, Universidade Estadual Paulista (UNESP), 18618-689, Botucatu, São Paulo, Brazil
237 rdf:type schema:Organization
238 https://www.grid.ac/institutes/grid.412376.5 schema:alternateName Universidade Federal do Pampa
239 schema:name Laboratório de Diversidade Genética Animal, Universidade Federal do Pampa (Unipampa), 97300-000, São Gabriel, Rio Grande do Sul, Brazil
240 Programa de Pós-graduação em Ciências Biológicas, Universidade Federal do Pampa (Unipampa), 97300-000, São Gabriel, Rio Grande do Sul, Brazil
241 rdf:type schema:Organization
242 https://www.grid.ac/institutes/grid.8532.c schema:alternateName Federal University of Rio Grande do Sul
243 schema:name Programa de Pós-graduação em Biologia Animal, Universidade Federal do Rio Grande do Sul (UFRGS), 91540-000, Porto Alegre, Rio Grande do Sul, Brazil
244 Programa de Pós-graduação em Genética e Biologia Molecular, Universidade Federal do Rio Grande do Sul (UFRGS), 91501-970, Porto Alegre, Rio Grande do Sul, Brazil
245 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...