Ontology type: schema:ScholarlyArticle
2008-10-10
AUTHORSRoberta Roberto, Doriana Misceo, Pietro D’Addabbo, Nicoletta Archidiacono, Mariano Rocchi
ABSTRACTWe have compared the synteny block organization of the official macaque genome sequence assembly (Jan. 2006; rheMac2) with an independent assembly that used a molecular cytogenetic approach. The mapping of four synteny segments, ranging in size from 4 Mb to 24 Mb, was found to be inconsistent between the two datasets. We specifically investigated these discrepancies by appropriate co-hybridization FISH experiments with validated reference probes located outside the area under study. We found that in the macaque rheMac2 release three synteny segments were wrongly mapped and one segment was incorrectly oriented. More... »
PAGES977-985
http://scigraph.springernature.com/pub.10.1007/s10577-008-1255-1
DOIhttp://dx.doi.org/10.1007/s10577-008-1255-1
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1015745547
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/18841486
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biochemistry and Cell Biology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Chromosome Mapping",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Chromosomes, Artificial, Bacterial",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cytogenetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Evolution, Molecular",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genome",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genome, Human",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Humans",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Hylobates",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "In Situ Hybridization, Fluorescence",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Macaca mulatta",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Species Specificity",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Synteny",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Department of Genetics and Microbiology, University of Bari, Via Amendola 165/A, 70126, Bari, Italy",
"id": "http://www.grid.ac/institutes/grid.7644.1",
"name": [
"Department of Genetics and Microbiology, University of Bari, Via Amendola 165/A, 70126, Bari, Italy"
],
"type": "Organization"
},
"familyName": "Roberto",
"givenName": "Roberta",
"id": "sg:person.01042046255.28",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01042046255.28"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Genetics and Microbiology, University of Bari, Via Amendola 165/A, 70126, Bari, Italy",
"id": "http://www.grid.ac/institutes/grid.7644.1",
"name": [
"Department of Genetics and Microbiology, University of Bari, Via Amendola 165/A, 70126, Bari, Italy"
],
"type": "Organization"
},
"familyName": "Misceo",
"givenName": "Doriana",
"id": "sg:person.01137464776.70",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01137464776.70"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Genetics and Microbiology, University of Bari, Via Amendola 165/A, 70126, Bari, Italy",
"id": "http://www.grid.ac/institutes/grid.7644.1",
"name": [
"Department of Genetics and Microbiology, University of Bari, Via Amendola 165/A, 70126, Bari, Italy"
],
"type": "Organization"
},
"familyName": "D\u2019Addabbo",
"givenName": "Pietro",
"id": "sg:person.01317561617.87",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01317561617.87"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Genetics and Microbiology, University of Bari, Via Amendola 165/A, 70126, Bari, Italy",
"id": "http://www.grid.ac/institutes/grid.7644.1",
"name": [
"Department of Genetics and Microbiology, University of Bari, Via Amendola 165/A, 70126, Bari, Italy"
],
"type": "Organization"
},
"familyName": "Archidiacono",
"givenName": "Nicoletta",
"id": "sg:person.056410501.58",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.056410501.58"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Genetics and Microbiology, University of Bari, Via Amendola 165/A, 70126, Bari, Italy",
"id": "http://www.grid.ac/institutes/grid.7644.1",
"name": [
"Department of Genetics and Microbiology, University of Bari, Via Amendola 165/A, 70126, Bari, Italy"
],
"type": "Organization"
},
"familyName": "Rocchi",
"givenName": "Mariano",
"id": "sg:person.01021645746.17",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01021645746.17"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1038/35057062",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042854081",
"https://doi.org/10.1038/35057062"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10577-007-1209-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049400574",
"https://doi.org/10.1007/s10577-007-1209-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00346004",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017099226",
"https://doi.org/10.1007/bf00346004"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10577-005-1002-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044901173",
"https://doi.org/10.1007/s10577-005-1002-9"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00439-006-0209-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1026180731",
"https://doi.org/10.1007/s00439-006-0209-y"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/35057157",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012003820",
"https://doi.org/10.1038/35057157"
],
"type": "CreativeWork"
}
],
"datePublished": "2008-10-10",
"datePublishedReg": "2008-10-10",
"description": "We have compared the synteny block organization of the official macaque genome sequence assembly (Jan. 2006; rheMac2) with an independent assembly that used a molecular cytogenetic approach. The mapping of four synteny segments, ranging in size from 4 Mb to 24 Mb, was found to be inconsistent between the two datasets. We specifically investigated these discrepancies by appropriate co-hybridization FISH experiments with validated reference probes located outside the area under study. We found that in the macaque rheMac2 release three synteny segments were wrongly mapped and one segment was incorrectly oriented.",
"genre": "article",
"id": "sg:pub.10.1007/s10577-008-1255-1",
"inLanguage": "en",
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1104385",
"issn": [
"0967-3849",
"1573-6849"
],
"name": "Chromosome Research",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "7",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "16"
}
],
"keywords": [
"assembly",
"reference probe",
"MB",
"probe",
"arrangement",
"size",
"refinement",
"independent assembly",
"experiments",
"segments",
"respect",
"study",
"approach",
"area",
"block organization",
"discrepancy",
"mapping",
"organization",
"sequence assembly",
"synteny segments",
"genome sequence assembly",
"molecular cytogenetic approaches",
"cytogenetic approaches",
"FISH experiments",
"dataset"
],
"name": "Refinement of macaque synteny arrangement with respect to the official rheMac2 macaque sequence assembly",
"pagination": "977-985",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1015745547"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s10577-008-1255-1"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"18841486"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s10577-008-1255-1",
"https://app.dimensions.ai/details/publication/pub.1015745547"
],
"sdDataset": "articles",
"sdDatePublished": "2022-05-20T07:24",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220519/entities/gbq_results/article/article_463.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1007/s10577-008-1255-1"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s10577-008-1255-1'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s10577-008-1255-1'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s10577-008-1255-1'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s10577-008-1255-1'
This table displays all metadata directly associated to this object as RDF triples.
195 TRIPLES
22 PREDICATES
71 URIs
56 LITERALS
20 BLANK NODES