FISH mapping and molecular organization of the major repetitive sequences of tomato View Full Text


Ontology type: schema:ScholarlyArticle      Open Access: True


Article Info

DATE

2008-10

AUTHORS

Song-Bin Chang, Tae-Jin Yang, Erwin Datema, Joke van Vugt, Ben Vosman, Anja Kuipers, Marie Meznikova, Dóra Szinay, René Klein Lankhorst, Evert Jacobsen, Hans de Jong

ABSTRACT

This paper presents a bird's-eye view of the major repeats and chromatin types of tomato. Using fluorescence in-situ hybridization (FISH) with Cot-1, Cot-10 and Cot-100 DNA as probes we mapped repetitive sequences of different complexity on pachytene complements. Cot-100 was found to cover all heterochromatin regions, and could be used to identify repeat-rich clones in BAC filter hybridization. Next we established the chromosomal locations of the tandem and dispersed repeats with respect to euchromatin, nucleolar organizer regions (NORs), heterochromatin, and centromeres. The tomato genomic repeats TGRII and TGRIII appeared to be major components of the pericentromeres, whereas the newly discovered TGRIV repeat was found mainly in the structural centromeres. The highly methylated NOR of chromosome 2 is rich in [GACA](4), a microsatellite that also forms part of the pericentromeres, together with [GA](8), [GATA](4) and Ty1-copia. Based on the morphology of pachytene chromosomes and the distribution of repeats studied so far, we now propose six different chromatin classes for tomato: (1) euchromatin, (2) chromomeres, (3) distal heterochromatin and interstitial heterochromatic knobs, (4) pericentromere heterochromatin, (5) functional centromere heterochromatin and (6) nucleolar organizer region. More... »

PAGES

919-933

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  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s10577-008-1249-z

    DOI

    http://dx.doi.org/10.1007/s10577-008-1249-z

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1052759022

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/18688733


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