Heterogeneous response to biostimulation for U(VI) reduction in replicated sediment microcosms View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2006-08

AUTHORS

Jennifer L. Nyman, Terence L. Marsh, Matthew A. Ginder-Vogel, Margaret Gentile, Scott Fendorf, Craig Criddle

ABSTRACT

A field-scale experiment to assess biostimulation of uranium reduction is underway at the Natural and Accelerated Bioremediation Research Field Research Center (FRC) in Oak Ridge, Tennessee. To simulate the field experiment, we established replicate batch microcosms containing well-mixed contaminated sediment from a well within the FRC treatment zone, and we added an inoculum from a pilot-scale fluidized bed reactor representing the inoculum in the field experiment. After reduction of nitrate, both sulfate and soluble U(VI) concentration decreased. X-ray absorption near edge structure (XANES) spectroscopy confirmed formation of U(IV) in sediment from biostimulated microcosms, but did not detect reduction of solid-phase Fe(III). Two to three fragments dominated terminal restriction fragment length polymorphism (T-RFLP) profiles of the 16S rDNA gene. Comparison to a clone library indicated these fragments represented denitrifying organisms related to Acidovorax, and Acidovorax isolates from the inoculum were subsequently shown to reduce U(VI). Investigation using the T-RFLP Analysis Program (TAP T-RFLP) and chemical analyses detected the presence and activity of fermenting and sulfate-reducing bacteria after 2 weeks. These organisms likely contributed to uranium reduction. In some microcosms, soluble U(VI) concentration leveled off or rebounded, indicating microbial and/or mineralogical heterogeneity among samples. Sulfate, acetate, and ethanol were depleted only in those microcosms exhibiting a rebound in soluble U(VI). This suggests that rates of U(VI) desorption can exceed rates of U(VI) reduction when sulfate-reducing bacteria become substrate-limited. These observations underscore the importance of effective chemical delivery and the role of serial and parallel processes in uranium reduction. More... »

PAGES

303-316

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s10532-005-9000-3

DOI

http://dx.doi.org/10.1007/s10532-005-9000-3

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1009736905

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/16491308


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0605", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Microbiology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Bacteria", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Biodegradation, Environmental", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Electrons", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Environmental Monitoring", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Geologic Sediments", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Nitrates", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Nitrogen", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phylogeny", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Polymorphism, Restriction Fragment Length", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Soil Pollutants, Radioactive", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Spectrophotometry", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Sulfates", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Uranium", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "X-Rays", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Stanford University", 
          "id": "https://www.grid.ac/institutes/grid.168010.e", 
          "name": [
            "Department of Civil and Environmental Engineering, M42 Terman Engineering Center, Stanford University, 380 Panama Mall, 94305-4020, Stanford, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Nyman", 
        "givenName": "Jennifer L.", 
        "id": "sg:person.01341030777.59", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01341030777.59"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Michigan State University", 
          "id": "https://www.grid.ac/institutes/grid.17088.36", 
          "name": [
            "Microbiology and Molecular Genetics, Michigan State University, 2215 Biomedical Physical Sciences, 48824-4320, East Lansing, MI, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Marsh", 
        "givenName": "Terence L.", 
        "id": "sg:person.0653045575.91", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0653045575.91"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Stanford University", 
          "id": "https://www.grid.ac/institutes/grid.168010.e", 
          "name": [
            "Department of Geological and Environmental Sciences, Stanford University, 450 Serra Mall, Braun Hall, Building 320, 94305-2115, Stanford, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ginder-Vogel", 
        "givenName": "Matthew A.", 
        "id": "sg:person.01363545440.46", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01363545440.46"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Stanford University", 
          "id": "https://www.grid.ac/institutes/grid.168010.e", 
          "name": [
            "Department of Civil and Environmental Engineering, M42 Terman Engineering Center, Stanford University, 380 Panama Mall, 94305-4020, Stanford, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Gentile", 
        "givenName": "Margaret", 
        "id": "sg:person.0663540077.09", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0663540077.09"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Stanford University", 
          "id": "https://www.grid.ac/institutes/grid.168010.e", 
          "name": [
            "Department of Geological and Environmental Sciences, Stanford University, 450 Serra Mall, Braun Hall, Building 320, 94305-2115, Stanford, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Fendorf", 
        "givenName": "Scott", 
        "id": "sg:person.0720547577.98", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0720547577.98"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Stanford University", 
          "id": "https://www.grid.ac/institutes/grid.168010.e", 
          "name": [
            "Department of Civil and Environmental Engineering, M42 Terman Engineering Center, Stanford University, 380 Panama Mall, 94305-4020, Stanford, CA, USA"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Criddle", 
        "givenName": "Craig", 
        "id": "sg:person.01163407701.39", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01163407701.39"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1038/35082545", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001855476", 
          "https://doi.org/10.1038/35082545"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/35082545", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1001855476", 
          "https://doi.org/10.1038/35082545"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00248-006-9024-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008569250", 
          "https://doi.org/10.1007/s00248-006-9024-1"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s00248-006-9024-1", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1008569250", 
          "https://doi.org/10.1007/s00248-006-9024-1"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/nar/gkg039", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1011103307"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.66.8.3616-3620.2000", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012895479"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0169-7722(98)00134-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1014154517"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf01204319", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017082059", 
          "https://doi.org/10.1007/bf01204319"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf01204319", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017082059", 
          "https://doi.org/10.1007/bf01204319"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1107/s0909049500021026", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1017601327"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.67.1.190-197.2001", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1019359899"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.69.3.1337-1346.2003", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021026060"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0025-3227(93)90148-o", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021308389"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0025-3227(93)90148-o", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021308389"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/350413a0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1021634584", 
          "https://doi.org/10.1038/350413a0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0167-7012(02)00252-x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1025494201"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/j.gca.2004.01.005", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1026782524"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/20025891106781", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1027111890"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1201/9781420027679.ch19", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1028041750"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.69.3.1847-1853.2003", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1029134185"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0168-9002(84)90077-9", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033674235"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/0168-9002(84)90077-9", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1033674235"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1046/j.1462-2920.2002.00317.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1037555540"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.69.10.5884-5891.2003", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042143146"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1046/j.1462-2920.2000.00140.x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1042444783"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es034639p", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1045260360"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es034639p", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1045260360"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1107/s0909049500016964", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1045837067"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0723-2020(99)80067-8", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1046634117"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0167-7012(03)00003-4", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1049499816"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es00025a026", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055485262"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es00053a016", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055486523"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es00054a034", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055486610"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es010846i", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055493357"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es010846i", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055493357"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es011240x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055493549"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es011240x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055493549"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es0210042", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055494463"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es0210042", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055494463"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es960836v", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055518255"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es960836v", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055518255"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es960868i", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055518267"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es960868i", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055518267"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es990787x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055522073"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1021/es990787x", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1055522073"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/714037720", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1058426248"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1126/science.240.4857.1319", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062536232"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1128/aem.69.6.3672-3675.2003", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1062710652"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1524/ract.92.1.11.25404", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1067648097"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1074498813", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://app.dimensions.ai/details/publication/pub.1074954397", 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1080/10588330390254928", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1099613139"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2006-08", 
    "datePublishedReg": "2006-08-01", 
    "description": "A field-scale experiment to assess biostimulation of uranium reduction is underway at the Natural and Accelerated Bioremediation Research Field Research Center (FRC) in Oak Ridge, Tennessee. To simulate the field experiment, we established replicate batch microcosms containing well-mixed contaminated sediment from a well within the FRC treatment zone, and we added an inoculum from a pilot-scale fluidized bed reactor representing the inoculum in the field experiment. After reduction of nitrate, both sulfate and soluble U(VI) concentration decreased. X-ray absorption near edge structure (XANES) spectroscopy confirmed formation of U(IV) in sediment from biostimulated microcosms, but did not detect reduction of solid-phase Fe(III). Two to three fragments dominated terminal restriction fragment length polymorphism (T-RFLP) profiles of the 16S rDNA gene. Comparison to a clone library indicated these fragments represented denitrifying organisms related to Acidovorax, and Acidovorax isolates from the inoculum were subsequently shown to reduce U(VI). Investigation using the T-RFLP Analysis Program (TAP T-RFLP) and chemical analyses detected the presence and activity of fermenting and sulfate-reducing bacteria after 2 weeks. These organisms likely contributed to uranium reduction. In some microcosms, soluble U(VI) concentration leveled off or rebounded, indicating microbial and/or mineralogical heterogeneity among samples. Sulfate, acetate, and ethanol were depleted only in those microcosms exhibiting a rebound in soluble U(VI). This suggests that rates of U(VI) desorption can exceed rates of U(VI) reduction when sulfate-reducing bacteria become substrate-limited. These observations underscore the importance of effective chemical delivery and the role of serial and parallel processes in uranium reduction.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s10532-005-9000-3", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isFundedItemOf": [
      {
        "id": "sg:grant.3029521", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.4319701", 
        "type": "MonetaryGrant"
      }, 
      {
        "id": "sg:grant.4110709", 
        "type": "MonetaryGrant"
      }
    ], 
    "isPartOf": [
      {
        "id": "sg:journal.1100914", 
        "issn": [
          "0923-9820", 
          "1572-9729"
        ], 
        "name": "Biodegradation", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "4", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "17"
      }
    ], 
    "name": "Heterogeneous response to biostimulation for U(VI) reduction in replicated sediment microcosms", 
    "pagination": "303-316", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "2e629fb6e4539eaff49eba48beaa54366ae2d43c79c730c698462171e9bf16a2"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "16491308"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "9100834"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s10532-005-9000-3"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1009736905"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s10532-005-9000-3", 
      "https://app.dimensions.ai/details/publication/pub.1009736905"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T12:55", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000364_0000000364/records_72869_00000000.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "http://link.springer.com/10.1007/s10532-005-9000-3"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s10532-005-9000-3'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s10532-005-9000-3'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s10532-005-9000-3'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s10532-005-9000-3'


 

This table displays all metadata directly associated to this object as RDF triples.

296 TRIPLES      21 PREDICATES      84 URIs      36 LITERALS      24 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s10532-005-9000-3 schema:about N142c2975e2454fc1b6bbc8041500b778
2 N17e9f83f8ae64c7f83ad97d000dabf2d
3 N346e04835b23498f8aa50565f49db6bf
4 N6707c188bef546b184eb50c5407a6789
5 N690847cfb6994f44984acb7d96a7e629
6 N7217364ca4294dbe87358bbabae13cd7
7 N8504080e0f484ad58b92680963fa8bea
8 N94ae29a8d0794a90be9f8e95afec79ed
9 Nbe1cb644c3e44bd3b04845f1729cb4f5
10 Nc77bbc06a8e9447f9e0ed7eadc15266b
11 Nd0e0a3cfaca4419aaa682ba1e380fd9c
12 Nd7b1097e19a64ef3b3e33c6f3853d1fc
13 Ne63e6f62287f46d3be79949828e28a89
14 Ne92717fdd8a4469b91a4ee3039a32f24
15 Nf9151100a55e4a74b32ba674efb78b04
16 anzsrc-for:06
17 anzsrc-for:0605
18 schema:author Nc1af4e69cf1d4695b0197ca6d4a56fc9
19 schema:citation sg:pub.10.1007/bf01204319
20 sg:pub.10.1007/s00248-006-9024-1
21 sg:pub.10.1038/350413a0
22 sg:pub.10.1038/35082545
23 https://app.dimensions.ai/details/publication/pub.1074498813
24 https://app.dimensions.ai/details/publication/pub.1074954397
25 https://doi.org/10.1016/0025-3227(93)90148-o
26 https://doi.org/10.1016/0168-9002(84)90077-9
27 https://doi.org/10.1016/j.gca.2004.01.005
28 https://doi.org/10.1016/s0167-7012(02)00252-x
29 https://doi.org/10.1016/s0167-7012(03)00003-4
30 https://doi.org/10.1016/s0169-7722(98)00134-x
31 https://doi.org/10.1016/s0723-2020(99)80067-8
32 https://doi.org/10.1021/es00025a026
33 https://doi.org/10.1021/es00053a016
34 https://doi.org/10.1021/es00054a034
35 https://doi.org/10.1021/es010846i
36 https://doi.org/10.1021/es011240x
37 https://doi.org/10.1021/es0210042
38 https://doi.org/10.1021/es034639p
39 https://doi.org/10.1021/es960836v
40 https://doi.org/10.1021/es960868i
41 https://doi.org/10.1021/es990787x
42 https://doi.org/10.1046/j.1462-2920.2000.00140.x
43 https://doi.org/10.1046/j.1462-2920.2002.00317.x
44 https://doi.org/10.1080/10588330390254928
45 https://doi.org/10.1080/20025891106781
46 https://doi.org/10.1080/714037720
47 https://doi.org/10.1093/nar/gkg039
48 https://doi.org/10.1107/s0909049500016964
49 https://doi.org/10.1107/s0909049500021026
50 https://doi.org/10.1126/science.240.4857.1319
51 https://doi.org/10.1128/aem.66.8.3616-3620.2000
52 https://doi.org/10.1128/aem.67.1.190-197.2001
53 https://doi.org/10.1128/aem.69.10.5884-5891.2003
54 https://doi.org/10.1128/aem.69.3.1337-1346.2003
55 https://doi.org/10.1128/aem.69.3.1847-1853.2003
56 https://doi.org/10.1128/aem.69.6.3672-3675.2003
57 https://doi.org/10.1201/9781420027679.ch19
58 https://doi.org/10.1524/ract.92.1.11.25404
59 schema:datePublished 2006-08
60 schema:datePublishedReg 2006-08-01
61 schema:description A field-scale experiment to assess biostimulation of uranium reduction is underway at the Natural and Accelerated Bioremediation Research Field Research Center (FRC) in Oak Ridge, Tennessee. To simulate the field experiment, we established replicate batch microcosms containing well-mixed contaminated sediment from a well within the FRC treatment zone, and we added an inoculum from a pilot-scale fluidized bed reactor representing the inoculum in the field experiment. After reduction of nitrate, both sulfate and soluble U(VI) concentration decreased. X-ray absorption near edge structure (XANES) spectroscopy confirmed formation of U(IV) in sediment from biostimulated microcosms, but did not detect reduction of solid-phase Fe(III). Two to three fragments dominated terminal restriction fragment length polymorphism (T-RFLP) profiles of the 16S rDNA gene. Comparison to a clone library indicated these fragments represented denitrifying organisms related to Acidovorax, and Acidovorax isolates from the inoculum were subsequently shown to reduce U(VI). Investigation using the T-RFLP Analysis Program (TAP T-RFLP) and chemical analyses detected the presence and activity of fermenting and sulfate-reducing bacteria after 2 weeks. These organisms likely contributed to uranium reduction. In some microcosms, soluble U(VI) concentration leveled off or rebounded, indicating microbial and/or mineralogical heterogeneity among samples. Sulfate, acetate, and ethanol were depleted only in those microcosms exhibiting a rebound in soluble U(VI). This suggests that rates of U(VI) desorption can exceed rates of U(VI) reduction when sulfate-reducing bacteria become substrate-limited. These observations underscore the importance of effective chemical delivery and the role of serial and parallel processes in uranium reduction.
62 schema:genre research_article
63 schema:inLanguage en
64 schema:isAccessibleForFree false
65 schema:isPartOf N16b55de203974f47b2f021abf4cf864f
66 Na11a6a4944dc4aa7bc946f71fe7c8ba0
67 sg:journal.1100914
68 schema:name Heterogeneous response to biostimulation for U(VI) reduction in replicated sediment microcosms
69 schema:pagination 303-316
70 schema:productId N35c18201368b4991898296e7b7b6dc5a
71 N866b479aa4cf43e2b9c7ce80296a033a
72 N87441b495a854c2a88140936976a6c1c
73 Ne00fafd189c740689fca5c3e600032fe
74 Ne8c03e9422cd41fd9d04019dc975e39f
75 schema:sameAs https://app.dimensions.ai/details/publication/pub.1009736905
76 https://doi.org/10.1007/s10532-005-9000-3
77 schema:sdDatePublished 2019-04-11T12:55
78 schema:sdLicense https://scigraph.springernature.com/explorer/license/
79 schema:sdPublisher Na76c253ccc9240d2853d9d946bffb41b
80 schema:url http://link.springer.com/10.1007/s10532-005-9000-3
81 sgo:license sg:explorer/license/
82 sgo:sdDataset articles
83 rdf:type schema:ScholarlyArticle
84 N142c2975e2454fc1b6bbc8041500b778 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
85 schema:name Polymorphism, Restriction Fragment Length
86 rdf:type schema:DefinedTerm
87 N16b55de203974f47b2f021abf4cf864f schema:volumeNumber 17
88 rdf:type schema:PublicationVolume
89 N17e9f83f8ae64c7f83ad97d000dabf2d schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
90 schema:name Biodegradation, Environmental
91 rdf:type schema:DefinedTerm
92 N1ed1fa855a574d34a3272be35b647bea rdf:first sg:person.0720547577.98
93 rdf:rest N50135616d5e54befa0bfe9d42ab24162
94 N346e04835b23498f8aa50565f49db6bf schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
95 schema:name Electrons
96 rdf:type schema:DefinedTerm
97 N34b45d600c0c44589ca4d1ad0ffd020e rdf:first sg:person.01363545440.46
98 rdf:rest N4bc779a7befc487b88796667de99ed1e
99 N35c18201368b4991898296e7b7b6dc5a schema:name dimensions_id
100 schema:value pub.1009736905
101 rdf:type schema:PropertyValue
102 N4bc779a7befc487b88796667de99ed1e rdf:first sg:person.0663540077.09
103 rdf:rest N1ed1fa855a574d34a3272be35b647bea
104 N50135616d5e54befa0bfe9d42ab24162 rdf:first sg:person.01163407701.39
105 rdf:rest rdf:nil
106 N55bf896283314ed39b179eff116384bf rdf:first sg:person.0653045575.91
107 rdf:rest N34b45d600c0c44589ca4d1ad0ffd020e
108 N6707c188bef546b184eb50c5407a6789 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
109 schema:name Soil Pollutants, Radioactive
110 rdf:type schema:DefinedTerm
111 N690847cfb6994f44984acb7d96a7e629 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
112 schema:name Sulfates
113 rdf:type schema:DefinedTerm
114 N7217364ca4294dbe87358bbabae13cd7 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
115 schema:name X-Rays
116 rdf:type schema:DefinedTerm
117 N8504080e0f484ad58b92680963fa8bea schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
118 schema:name Environmental Monitoring
119 rdf:type schema:DefinedTerm
120 N866b479aa4cf43e2b9c7ce80296a033a schema:name pubmed_id
121 schema:value 16491308
122 rdf:type schema:PropertyValue
123 N87441b495a854c2a88140936976a6c1c schema:name doi
124 schema:value 10.1007/s10532-005-9000-3
125 rdf:type schema:PropertyValue
126 N94ae29a8d0794a90be9f8e95afec79ed schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
127 schema:name Phylogeny
128 rdf:type schema:DefinedTerm
129 Na11a6a4944dc4aa7bc946f71fe7c8ba0 schema:issueNumber 4
130 rdf:type schema:PublicationIssue
131 Na76c253ccc9240d2853d9d946bffb41b schema:name Springer Nature - SN SciGraph project
132 rdf:type schema:Organization
133 Nbe1cb644c3e44bd3b04845f1729cb4f5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
134 schema:name Geologic Sediments
135 rdf:type schema:DefinedTerm
136 Nc1af4e69cf1d4695b0197ca6d4a56fc9 rdf:first sg:person.01341030777.59
137 rdf:rest N55bf896283314ed39b179eff116384bf
138 Nc77bbc06a8e9447f9e0ed7eadc15266b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
139 schema:name Bacteria
140 rdf:type schema:DefinedTerm
141 Nd0e0a3cfaca4419aaa682ba1e380fd9c schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
142 schema:name Nitrates
143 rdf:type schema:DefinedTerm
144 Nd7b1097e19a64ef3b3e33c6f3853d1fc schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
145 schema:name DNA
146 rdf:type schema:DefinedTerm
147 Ne00fafd189c740689fca5c3e600032fe schema:name nlm_unique_id
148 schema:value 9100834
149 rdf:type schema:PropertyValue
150 Ne63e6f62287f46d3be79949828e28a89 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
151 schema:name Spectrophotometry
152 rdf:type schema:DefinedTerm
153 Ne8c03e9422cd41fd9d04019dc975e39f schema:name readcube_id
154 schema:value 2e629fb6e4539eaff49eba48beaa54366ae2d43c79c730c698462171e9bf16a2
155 rdf:type schema:PropertyValue
156 Ne92717fdd8a4469b91a4ee3039a32f24 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
157 schema:name Uranium
158 rdf:type schema:DefinedTerm
159 Nf9151100a55e4a74b32ba674efb78b04 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
160 schema:name Nitrogen
161 rdf:type schema:DefinedTerm
162 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
163 schema:name Biological Sciences
164 rdf:type schema:DefinedTerm
165 anzsrc-for:0605 schema:inDefinedTermSet anzsrc-for:
166 schema:name Microbiology
167 rdf:type schema:DefinedTerm
168 sg:grant.3029521 http://pending.schema.org/fundedItem sg:pub.10.1007/s10532-005-9000-3
169 rdf:type schema:MonetaryGrant
170 sg:grant.4110709 http://pending.schema.org/fundedItem sg:pub.10.1007/s10532-005-9000-3
171 rdf:type schema:MonetaryGrant
172 sg:grant.4319701 http://pending.schema.org/fundedItem sg:pub.10.1007/s10532-005-9000-3
173 rdf:type schema:MonetaryGrant
174 sg:journal.1100914 schema:issn 0923-9820
175 1572-9729
176 schema:name Biodegradation
177 rdf:type schema:Periodical
178 sg:person.01163407701.39 schema:affiliation https://www.grid.ac/institutes/grid.168010.e
179 schema:familyName Criddle
180 schema:givenName Craig
181 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01163407701.39
182 rdf:type schema:Person
183 sg:person.01341030777.59 schema:affiliation https://www.grid.ac/institutes/grid.168010.e
184 schema:familyName Nyman
185 schema:givenName Jennifer L.
186 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01341030777.59
187 rdf:type schema:Person
188 sg:person.01363545440.46 schema:affiliation https://www.grid.ac/institutes/grid.168010.e
189 schema:familyName Ginder-Vogel
190 schema:givenName Matthew A.
191 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01363545440.46
192 rdf:type schema:Person
193 sg:person.0653045575.91 schema:affiliation https://www.grid.ac/institutes/grid.17088.36
194 schema:familyName Marsh
195 schema:givenName Terence L.
196 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0653045575.91
197 rdf:type schema:Person
198 sg:person.0663540077.09 schema:affiliation https://www.grid.ac/institutes/grid.168010.e
199 schema:familyName Gentile
200 schema:givenName Margaret
201 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0663540077.09
202 rdf:type schema:Person
203 sg:person.0720547577.98 schema:affiliation https://www.grid.ac/institutes/grid.168010.e
204 schema:familyName Fendorf
205 schema:givenName Scott
206 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0720547577.98
207 rdf:type schema:Person
208 sg:pub.10.1007/bf01204319 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017082059
209 https://doi.org/10.1007/bf01204319
210 rdf:type schema:CreativeWork
211 sg:pub.10.1007/s00248-006-9024-1 schema:sameAs https://app.dimensions.ai/details/publication/pub.1008569250
212 https://doi.org/10.1007/s00248-006-9024-1
213 rdf:type schema:CreativeWork
214 sg:pub.10.1038/350413a0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021634584
215 https://doi.org/10.1038/350413a0
216 rdf:type schema:CreativeWork
217 sg:pub.10.1038/35082545 schema:sameAs https://app.dimensions.ai/details/publication/pub.1001855476
218 https://doi.org/10.1038/35082545
219 rdf:type schema:CreativeWork
220 https://app.dimensions.ai/details/publication/pub.1074498813 schema:CreativeWork
221 https://app.dimensions.ai/details/publication/pub.1074954397 schema:CreativeWork
222 https://doi.org/10.1016/0025-3227(93)90148-o schema:sameAs https://app.dimensions.ai/details/publication/pub.1021308389
223 rdf:type schema:CreativeWork
224 https://doi.org/10.1016/0168-9002(84)90077-9 schema:sameAs https://app.dimensions.ai/details/publication/pub.1033674235
225 rdf:type schema:CreativeWork
226 https://doi.org/10.1016/j.gca.2004.01.005 schema:sameAs https://app.dimensions.ai/details/publication/pub.1026782524
227 rdf:type schema:CreativeWork
228 https://doi.org/10.1016/s0167-7012(02)00252-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1025494201
229 rdf:type schema:CreativeWork
230 https://doi.org/10.1016/s0167-7012(03)00003-4 schema:sameAs https://app.dimensions.ai/details/publication/pub.1049499816
231 rdf:type schema:CreativeWork
232 https://doi.org/10.1016/s0169-7722(98)00134-x schema:sameAs https://app.dimensions.ai/details/publication/pub.1014154517
233 rdf:type schema:CreativeWork
234 https://doi.org/10.1016/s0723-2020(99)80067-8 schema:sameAs https://app.dimensions.ai/details/publication/pub.1046634117
235 rdf:type schema:CreativeWork
236 https://doi.org/10.1021/es00025a026 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055485262
237 rdf:type schema:CreativeWork
238 https://doi.org/10.1021/es00053a016 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055486523
239 rdf:type schema:CreativeWork
240 https://doi.org/10.1021/es00054a034 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055486610
241 rdf:type schema:CreativeWork
242 https://doi.org/10.1021/es010846i schema:sameAs https://app.dimensions.ai/details/publication/pub.1055493357
243 rdf:type schema:CreativeWork
244 https://doi.org/10.1021/es011240x schema:sameAs https://app.dimensions.ai/details/publication/pub.1055493549
245 rdf:type schema:CreativeWork
246 https://doi.org/10.1021/es0210042 schema:sameAs https://app.dimensions.ai/details/publication/pub.1055494463
247 rdf:type schema:CreativeWork
248 https://doi.org/10.1021/es034639p schema:sameAs https://app.dimensions.ai/details/publication/pub.1045260360
249 rdf:type schema:CreativeWork
250 https://doi.org/10.1021/es960836v schema:sameAs https://app.dimensions.ai/details/publication/pub.1055518255
251 rdf:type schema:CreativeWork
252 https://doi.org/10.1021/es960868i schema:sameAs https://app.dimensions.ai/details/publication/pub.1055518267
253 rdf:type schema:CreativeWork
254 https://doi.org/10.1021/es990787x schema:sameAs https://app.dimensions.ai/details/publication/pub.1055522073
255 rdf:type schema:CreativeWork
256 https://doi.org/10.1046/j.1462-2920.2000.00140.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1042444783
257 rdf:type schema:CreativeWork
258 https://doi.org/10.1046/j.1462-2920.2002.00317.x schema:sameAs https://app.dimensions.ai/details/publication/pub.1037555540
259 rdf:type schema:CreativeWork
260 https://doi.org/10.1080/10588330390254928 schema:sameAs https://app.dimensions.ai/details/publication/pub.1099613139
261 rdf:type schema:CreativeWork
262 https://doi.org/10.1080/20025891106781 schema:sameAs https://app.dimensions.ai/details/publication/pub.1027111890
263 rdf:type schema:CreativeWork
264 https://doi.org/10.1080/714037720 schema:sameAs https://app.dimensions.ai/details/publication/pub.1058426248
265 rdf:type schema:CreativeWork
266 https://doi.org/10.1093/nar/gkg039 schema:sameAs https://app.dimensions.ai/details/publication/pub.1011103307
267 rdf:type schema:CreativeWork
268 https://doi.org/10.1107/s0909049500016964 schema:sameAs https://app.dimensions.ai/details/publication/pub.1045837067
269 rdf:type schema:CreativeWork
270 https://doi.org/10.1107/s0909049500021026 schema:sameAs https://app.dimensions.ai/details/publication/pub.1017601327
271 rdf:type schema:CreativeWork
272 https://doi.org/10.1126/science.240.4857.1319 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062536232
273 rdf:type schema:CreativeWork
274 https://doi.org/10.1128/aem.66.8.3616-3620.2000 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012895479
275 rdf:type schema:CreativeWork
276 https://doi.org/10.1128/aem.67.1.190-197.2001 schema:sameAs https://app.dimensions.ai/details/publication/pub.1019359899
277 rdf:type schema:CreativeWork
278 https://doi.org/10.1128/aem.69.10.5884-5891.2003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1042143146
279 rdf:type schema:CreativeWork
280 https://doi.org/10.1128/aem.69.3.1337-1346.2003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1021026060
281 rdf:type schema:CreativeWork
282 https://doi.org/10.1128/aem.69.3.1847-1853.2003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1029134185
283 rdf:type schema:CreativeWork
284 https://doi.org/10.1128/aem.69.6.3672-3675.2003 schema:sameAs https://app.dimensions.ai/details/publication/pub.1062710652
285 rdf:type schema:CreativeWork
286 https://doi.org/10.1201/9781420027679.ch19 schema:sameAs https://app.dimensions.ai/details/publication/pub.1028041750
287 rdf:type schema:CreativeWork
288 https://doi.org/10.1524/ract.92.1.11.25404 schema:sameAs https://app.dimensions.ai/details/publication/pub.1067648097
289 rdf:type schema:CreativeWork
290 https://www.grid.ac/institutes/grid.168010.e schema:alternateName Stanford University
291 schema:name Department of Civil and Environmental Engineering, M42 Terman Engineering Center, Stanford University, 380 Panama Mall, 94305-4020, Stanford, CA, USA
292 Department of Geological and Environmental Sciences, Stanford University, 450 Serra Mall, Braun Hall, Building 320, 94305-2115, Stanford, CA, USA
293 rdf:type schema:Organization
294 https://www.grid.ac/institutes/grid.17088.36 schema:alternateName Michigan State University
295 schema:name Microbiology and Molecular Genetics, Michigan State University, 2215 Biomedical Physical Sciences, 48824-4320, East Lansing, MI, USA
296 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...