Ontology type: schema:ScholarlyArticle
2020-03-27
AUTHORSSivaraman Gokul, Vereena Rodrigues, Amit Kumar, Ram S. Verma, Ashutosh K. Shukla, Velusamy Sundaresan
ABSTRACTInformation on the genetic diversity and population structure is essential for developing conservational management programs, especially for threatened species. Decalepis salicifolia (Bedd. ex Hook.f.) Venter is a steno-endemic and critically endangered species of the south Western Ghats of India. The present study used ISSR markers as well as essential oil profiling to reveal the extent and distribution of genetic as well as the chemical diversity of all the twelve known populations of D. salicifolia. A total of 84 amplicons generated using 17 ISSR primers represented an overall 72.34% polymorphism. The highest percentage of polymorphic loci was recorded in the population of Theemalai (40.48%) and lowest in Kokanmalai (4.76%) with an average of 20.04% across all the studied populations. At the species level, the Nei’s genetic diversity observed was 0.255 ± 0.186, while Shannon’s information index observed was 0.385 ± 0.260. The genetic similarity-based unweighted pair-group method with arithmetic average dendrogram grouped the populations according to their geographic locations, which was corroborated by principal component analysis and Bayesian clustering. Distribution of genetic variance through analysis of molecular variance indicated that 38% variance resides within the population, and 62% variance resides among the populations (P < 0.001). Gas chromatography analyses of root volatiles showed significant variation in the percent content of 2-hydroxy-4-methoxybenzaldehyde. The Mantel test analyses showed a positive correlation between the genetic versus geographic distances. Based on the results, both ex situ and in situ conservation strategies are suggested to maximally preserve the genetic resources of this endangered species. More... »
PAGES452-472
http://scigraph.springernature.com/pub.10.1007/s10528-020-09958-x
DOIhttp://dx.doi.org/10.1007/s10528-020-09958-x
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1125956547
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/32221756
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Animals",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Apocynaceae",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Bayes Theorem",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cluster Analysis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA, Plant",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Endangered Species",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genetic Loci",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genotype",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "India",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Microsatellite Repeats",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Oils, Volatile",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Plant Extracts",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Plant Leaves",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Plant Oils",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Plant Roots",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Polymorphism, Genetic",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Principal Component Analysis",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Plant Biology and Systematics, CSIR - Central Institute of Medicinal and Aromatic Plants, Research Center, 560 065, Bengaluru, Karnataka, India",
"id": "http://www.grid.ac/institutes/grid.417631.6",
"name": [
"Plant Biology and Systematics, CSIR - Central Institute of Medicinal and Aromatic Plants, Research Center, 560 065, Bengaluru, Karnataka, India"
],
"type": "Organization"
},
"familyName": "Gokul",
"givenName": "Sivaraman",
"id": "sg:person.0661672111.03",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0661672111.03"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Plant Biology and Systematics, CSIR - Central Institute of Medicinal and Aromatic Plants, Research Center, 560 065, Bengaluru, Karnataka, India",
"id": "http://www.grid.ac/institutes/grid.417631.6",
"name": [
"Plant Biology and Systematics, CSIR - Central Institute of Medicinal and Aromatic Plants, Research Center, 560 065, Bengaluru, Karnataka, India"
],
"type": "Organization"
},
"familyName": "Rodrigues",
"givenName": "Vereena",
"id": "sg:person.015436614765.37",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015436614765.37"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Plant Biology and Systematics, CSIR - Central Institute of Medicinal and Aromatic Plants, Research Center, 560 065, Bengaluru, Karnataka, India",
"id": "http://www.grid.ac/institutes/grid.417631.6",
"name": [
"Plant Biology and Systematics, CSIR - Central Institute of Medicinal and Aromatic Plants, Research Center, 560 065, Bengaluru, Karnataka, India"
],
"type": "Organization"
},
"familyName": "Kumar",
"givenName": "Amit",
"id": "sg:person.0613556711.16",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0613556711.16"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Chemical Sciences Division, CSIR - Central Institute of Medicinal and Aromatic Plants, 226 015, Lucknow, India",
"id": "http://www.grid.ac/institutes/grid.417631.6",
"name": [
"Chemical Sciences Division, CSIR - Central Institute of Medicinal and Aromatic Plants, 226 015, Lucknow, India"
],
"type": "Organization"
},
"familyName": "Verma",
"givenName": "Ram S.",
"id": "sg:person.01005676755.34",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01005676755.34"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Biotechnology Division, CSIR - Central Institute of Medicinal and Aromatic Plants, 226 015, Lucknow, India",
"id": "http://www.grid.ac/institutes/grid.417631.6",
"name": [
"Biotechnology Division, CSIR - Central Institute of Medicinal and Aromatic Plants, 226 015, Lucknow, India"
],
"type": "Organization"
},
"familyName": "Shukla",
"givenName": "Ashutosh K.",
"id": "sg:person.0746716663.99",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0746716663.99"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Plant Biology and Systematics, CSIR - Central Institute of Medicinal and Aromatic Plants, Research Center, 560 065, Bengaluru, Karnataka, India",
"id": "http://www.grid.ac/institutes/grid.417631.6",
"name": [
"Plant Biology and Systematics, CSIR - Central Institute of Medicinal and Aromatic Plants, Research Center, 560 065, Bengaluru, Karnataka, India"
],
"type": "Organization"
},
"familyName": "Sundaresan",
"givenName": "Velusamy",
"id": "sg:person.01036114351.22",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01036114351.22"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/s11295-016-1024-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1006306982",
"https://doi.org/10.1007/s11295-016-1024-9"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11130-013-0363-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027078233",
"https://doi.org/10.1007/s11130-013-0363-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12010-015-1654-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028857286",
"https://doi.org/10.1007/s12010-015-1654-7"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/s41598-017-14887-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1092429291",
"https://doi.org/10.1038/s41598-017-14887-8"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10528-016-9742-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027357312",
"https://doi.org/10.1007/s10528-016-9742-0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10528-018-9875-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1105779259",
"https://doi.org/10.1007/s10528-018-9875-4"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1007528101452",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020688090",
"https://doi.org/10.1023/a:1007528101452"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf03046869",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085563433",
"https://doi.org/10.1007/bf03046869"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1365/s10337-006-0146-x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011954507",
"https://doi.org/10.1365/s10337-006-0146-x"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s001220051665",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005575628",
"https://doi.org/10.1007/s001220051665"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s12686-011-9548-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014160842",
"https://doi.org/10.1007/s12686-011-9548-7"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1009680614564",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020979465",
"https://doi.org/10.1023/a:1009680614564"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10528-017-9803-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085195209",
"https://doi.org/10.1007/s10528-017-9803-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00606-013-0970-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039892575",
"https://doi.org/10.1007/s00606-013-0970-z"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s001220051046",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044581378",
"https://doi.org/10.1007/s001220051046"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-1-4757-2504-9_9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1089751767",
"https://doi.org/10.1007/978-1-4757-2504-9_9"
],
"type": "CreativeWork"
}
],
"datePublished": "2020-03-27",
"datePublishedReg": "2020-03-27",
"description": "Information on the genetic diversity and population structure is essential for developing conservational management programs, especially for threatened species. Decalepis salicifolia (Bedd. ex Hook.f.) Venter is a steno-endemic and critically endangered species of the south Western Ghats of India. The present study used ISSR markers as well as essential oil profiling to reveal the extent and distribution of genetic as well as the chemical diversity of all the twelve known populations of D. salicifolia. A total of 84 amplicons generated using 17 ISSR primers represented an overall 72.34% polymorphism. The highest percentage of polymorphic loci was recorded in the population of Theemalai (40.48%) and lowest in Kokanmalai (4.76%) with an average of 20.04% across all the studied populations. At the species level, the Nei\u2019s genetic diversity observed was 0.255\u2009\u00b1\u20090.186, while Shannon\u2019s information index observed was 0.385\u2009\u00b1\u20090.260. The genetic similarity-based unweighted pair-group method with arithmetic average dendrogram grouped the populations according to their geographic locations, which was corroborated by principal component analysis and Bayesian clustering. Distribution of genetic variance through analysis of molecular variance indicated that 38% variance resides within the population, and 62% variance resides among the populations (P\u2009<\u20090.001). Gas chromatography analyses of root volatiles showed significant variation in the percent content of 2-hydroxy-4-methoxybenzaldehyde. The Mantel test analyses showed a positive correlation between the genetic versus geographic distances. Based on the results, both ex situ and in situ conservation strategies are suggested to maximally preserve the genetic resources of this endangered species.",
"genre": "article",
"id": "sg:pub.10.1007/s10528-020-09958-x",
"inLanguage": "en",
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1008668",
"issn": [
"0006-2928",
"1573-4927"
],
"name": "Biochemical Genetics",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "3",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "58"
}
],
"keywords": [
"genetic diversity",
"Western Ghats",
"situ conservation strategies",
"Mantel test analysis",
"information index",
"South Western Ghats",
"Nei's genetic diversity",
"Shannon's information index",
"conservation strategies",
"conservation implications",
"unweighted pair group method",
"arithmetic averages (UPGMA) dendrogram",
"known populations",
"Bayesian clustering",
"geographic distance",
"pair group method",
"population structure",
"molecular variance",
"D. salicifolia",
"population genetics",
"essential oil profiling",
"species level",
"ISSR markers",
"root volatiles",
"average dendrogram",
"genetic resources",
"ISSR primers",
"polymorphic loci",
"ex situ",
"genetic variance",
"principal component analysis",
"diversity",
"species",
"management program",
"Ghats",
"chemical diversity",
"geographic location",
"studied population",
"component analysis",
"genetics",
"venter",
"endemics",
"profiling",
"population",
"positive correlation",
"significant variation",
"salicifolia",
"distribution",
"loci",
"India",
"dendrogram",
"amplicons",
"chemical profiling",
"variance",
"percent content",
"primers",
"high percentage",
"polymorphism",
"chromatography analysis",
"resources",
"variation",
"present study",
"location",
"markers",
"content",
"extent",
"index",
"volatiles",
"gas chromatography analysis",
"analysis",
"distance",
"situ",
"implications",
"average",
"strategies",
"information",
"percentage",
"levels",
"clustering",
"correlation",
"structure",
"program",
"study",
"total",
"results",
"test analysis",
"method"
],
"name": "Population Genetics Coupled Chemical Profiling for Conservation Implications of Decalepis salicifolia (Bedd. ex Hook.f.) Venter, an Endemic and Critically Endangered Species of Western Ghats, India",
"pagination": "452-472",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1125956547"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s10528-020-09958-x"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"32221756"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s10528-020-09958-x",
"https://app.dimensions.ai/details/publication/pub.1125956547"
],
"sdDataset": "articles",
"sdDatePublished": "2022-05-20T07:37",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220519/entities/gbq_results/article/article_862.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1007/s10528-020-09958-x"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s10528-020-09958-x'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s10528-020-09958-x'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s10528-020-09958-x'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s10528-020-09958-x'
This table displays all metadata directly associated to this object as RDF triples.
320 TRIPLES
22 PREDICATES
146 URIs
122 LITERALS
24 BLANK NODES