Cupriavidus lacunae sp. nov., isolated from pond-side soil View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2019-04

AUTHORS

Tingye Feng, Kyung Hyun Kim, Jeill Oh, Che Ok Jeon

ABSTRACT

A Gram-stain negative, strictly aerobic, mesophilic bacterial strain, designated strain S23T, was isolated from pond-side soil of an artificial pond in South Korea. Cells were observed to be peritrichously flagellated short rods showing positive oxidase and catalase activities. Growth of strain S23T was observed at 15-37 °C (optimum, 30 °C), pH 5.0-9.0 (optimum, pH 7.0-8.0) and 0-2% (w/v) NaCl (optimum, 0-0.5%). The major respiratory quinone was identified as ubiquinone-8 and the major fatty acids were identified as C16:0, cyclo-C17:0, summed feature 3 (C16:1ω7c and/or C16:1ω6c) and summed feature 8 (C18:1ω7c and/or C18:1ω6c). The G + C content of the genomic DNA was determined to be 65.1 mol%. Phosphatidylglycerol, phosphatidylethanolamine and an unidentified phospholipid were detected as the major polar lipids. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain S23T formed a phyletic lineage with Cupriavidus necator N-1T within the genus Cupriavidus. Strain S23T is closely related to C. necator N-1T (99.2%), Cupriavidus basilensis DSM 11853T (98.8%), Cupriavidus alkaliphilus ASC-732T (98.8%) and Cupriavidus numazuensis TE26T (98.7%), based on 16S rRNA gene sequence similarities. However, the DNA-DNA relatedness values between strain S23T and the closely related type strains were less than 46%. On the basis of phenotypic, chemotaxonomic and molecular properties, strain S23T represents a novel species of the genus Cupriavidus, for which the name Cupriavidus lacunae sp. nov. is proposed. The type strain is S23T (KACC 19624T = JCM 32674T). More... »

PAGES

543-551

References to SciGraph publications

Journal

TITLE

Antonie van Leeuwenhoek

ISSUE

4

VOLUME

112

Author Affiliations

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s10482-018-1187-5

DOI

http://dx.doi.org/10.1007/s10482-018-1187-5

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1107599777

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/30317454


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39 schema:description A Gram-stain negative, strictly aerobic, mesophilic bacterial strain, designated strain S23<sup>T</sup>, was isolated from pond-side soil of an artificial pond in South Korea. Cells were observed to be peritrichously flagellated short rods showing positive oxidase and catalase activities. Growth of strain S23<sup>T</sup> was observed at 15-37 °C (optimum, 30 °C), pH 5.0-9.0 (optimum, pH 7.0-8.0) and 0-2% (w/v) NaCl (optimum, 0-0.5%). The major respiratory quinone was identified as ubiquinone-8 and the major fatty acids were identified as C<sub>16:0</sub>, cyclo-C<sub>17:0</sub>, summed feature 3 (C<sub>16:1</sub>ω7c and/or C<sub>16:1</sub>ω6c) and summed feature 8 (C<sub>18:1</sub>ω7c and/or C<sub>18:1</sub>ω6c). The G + C content of the genomic DNA was determined to be 65.1 mol%. Phosphatidylglycerol, phosphatidylethanolamine and an unidentified phospholipid were detected as the major polar lipids. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain S23<sup>T</sup> formed a phyletic lineage with Cupriavidus necator N-1<sup>T</sup> within the genus Cupriavidus. Strain S23<sup>T</sup> is closely related to C. necator N-1<sup>T</sup> (99.2%), Cupriavidus basilensis DSM 11853<sup>T</sup> (98.8%), Cupriavidus alkaliphilus ASC-732<sup>T</sup> (98.8%) and Cupriavidus numazuensis TE26<sup>T</sup> (98.7%), based on 16S rRNA gene sequence similarities. However, the DNA-DNA relatedness values between strain S23<sup>T</sup> and the closely related type strains were less than 46%. On the basis of phenotypic, chemotaxonomic and molecular properties, strain S23<sup>T</sup> represents a novel species of the genus Cupriavidus, for which the name Cupriavidus lacunae sp. nov. is proposed. The type strain is S23<sup>T</sup> (KACC 19624<sup>T</sup> = JCM 32674<sup>T</sup>).
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