Idiomarina andamanensis sp. nov., an alkalitolerant bacterium isolated from Andaman Sea water View Full Text


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Article Info

DATE

2017-12

AUTHORS

Sherin Zachariah, Subrata K. Das

ABSTRACT

Two closely related aerobic, Gram-negative rod shaped bacteria (strain W5T and W3) were isolated from Andaman Sea. Heterotrophic growth on marine agar was observed at 15-45 °C and pH 6-10. Strain W5T showed maximum 16S rRNA sequence similarity of 99.58% with Idiomarina marina JCM 15083T. DNA fingerprinting analysis by ERIC-REP PCR, PFGE and MLSA revealed differences in banding patterns, also DNA-DNA hybridization values were well below 70% confirming W5T to be a new species. DNA G+C content was 46.7 mol%. Major fatty acids were iso-C15:0, iso-C17:0, iso-C17:1 ω9c, iso-C13:0 3OH, iso-C11:0 3OH and C16:0. Polar lipids included phosphatidylglycerol (PG) and phosphatidylethanolamine (PE) diphosphatidylglycerol (DPG) phospholipid (PL) two aminolipids (AL) and two unidentified lipids (L1-2). Q-8 is the predominant ubiquinone. On the basis of polyphasic taxonomic study, strain W5T is considered to be representative of a new species of the genus Idiomarina, for which the name Idiomarina andamanensis sp. nov. is being proposed. The type strain W5T (= LMG 29773T = JCM 31645T) was isolated from Andaman Sea. More... »

PAGES

1581-1592

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s10482-017-0908-5

DOI

http://dx.doi.org/10.1007/s10482-017-0908-5

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1090832442

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/28730371


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51 schema:description Two closely related aerobic, Gram-negative rod shaped bacteria (strain W5<sup>T</sup> and W3) were isolated from Andaman Sea. Heterotrophic growth on marine agar was observed at 15-45 °C and pH 6-10. Strain W5<sup>T</sup> showed maximum 16S rRNA sequence similarity of 99.58% with Idiomarina marina JCM 15083<sup>T</sup>. DNA fingerprinting analysis by ERIC-REP PCR, PFGE and MLSA revealed differences in banding patterns, also DNA-DNA hybridization values were well below 70% confirming W5<sup>T</sup> to be a new species. DNA G+C content was 46.7 mol%. Major fatty acids were iso-C15:0, iso-C17:0, iso-C17:1 ω9c, iso-C13:0 3OH, iso-C11:0 3OH and C16:0. Polar lipids included phosphatidylglycerol (PG) and phosphatidylethanolamine (PE) diphosphatidylglycerol (DPG) phospholipid (PL) two aminolipids (AL) and two unidentified lipids (L1-2). Q-8 is the predominant ubiquinone. On the basis of polyphasic taxonomic study, strain W5<sup>T</sup> is considered to be representative of a new species of the genus Idiomarina, for which the name Idiomarina andamanensis sp. nov. is being proposed. The type strain W5<sup>T</sup> (= LMG 29773<sup>T</sup> = JCM 31645<sup>T</sup>) was isolated from Andaman Sea.
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