Ontology type: schema:ScholarlyArticle
2012-01-25
AUTHORSGuo-Xing Nie, Hong Ming, Shuai Li, En-Min Zhou, Juan Cheng, Tian-Tian Yu, Jing Zhang, Hui-Gen Feng, Shu-Kun Tang, Wen-Jun Li
ABSTRACTA novel actinomycete, designated as strain YIM 75980T, was isolated from a soil sample collected from a dry-hot river valley in Dongchuan county, Yunnan province, south-west China and was subjected to polyphasic taxonomic characterization. The organism produced circular, smooth, red to black coloured colonies comprising coccoid-shaped cells. Colonies on agar medium lacked mycelia and cells adhered to the agar. Strain YIM 75980T contained meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan and contained galactose, arabinose and glucosamine as the main sugars in the whole-cell hydrolysates. The predominant menaquinone was MK-9 (H4) and the major fatty acids were iso-C15:0, iso-C16:0 and C16:0. The DNA G + C content of strain YIM 75980T was 73.1 mol%. Phylogenetic analyses based on 16S rRNA gene sequences clearly showed that strain YIM 75980T formed a distinct clade within the genus Geodermatophilus and was closely related to Geodermatophilus obscurus DSM 43160T (level of similarity, 97.9%). Furthermore, the result of DNA–DNA hybridization between strain YIM 75980T and G. obscurus 43160T demonstrated that this isolate represented a different genomic species in the genus Geodermatophilus. Moreover, the physiological and biochemical data showed the differentiation of strain YIM 75980T from its closest phylogenetic neighbour. Therefore, it is proposed that strain YIM 75980T represents a novel species of the genus Geodermatophilus, for which the name Geodermatophilusnigrescens sp. nov. is proposed. The type strain is YIM 75980T (=CCTCC AA 2011015T =JCM 18056T). More... »
PAGES811-817
http://scigraph.springernature.com/pub.10.1007/s10482-012-9696-0
DOIhttp://dx.doi.org/10.1007/s10482-012-9696-0
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1043805497
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/22273761
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Actinomycetales",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Bacterial Typing Techniques",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Base Composition",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Carbohydrates",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "China",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cluster Analysis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Culture Media",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA, Bacterial",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA, Ribosomal",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Diaminopimelic Acid",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Fatty Acids",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Molecular Sequence Data",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Nucleic Acid Hybridization",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Peptidoglycan",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phylogeny",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Pigments, Biological",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "RNA, Ribosomal, 16S",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sequence Analysis, DNA",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Soil Microbiology",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Vitamin K 2",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "College of Life Sciences, Henan Normal University, 453007, Xinxiang, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.462338.8",
"name": [
"College of Life Sciences, Henan Normal University, 453007, Xinxiang, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Nie",
"givenName": "Guo-Xing",
"id": "sg:person.01151014063.54",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01151014063.54"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.440773.3",
"name": [
"Department of Life Sciences and Technology, Xinxiang Medical University, 453003, Xinxiang, People\u2019s Republic of China",
"Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Ming",
"givenName": "Hong",
"id": "sg:person.01300774532.49",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01300774532.49"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "College of Life Sciences, Henan Normal University, 453007, Xinxiang, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.462338.8",
"name": [
"College of Life Sciences, Henan Normal University, 453007, Xinxiang, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Li",
"givenName": "Shuai",
"id": "sg:person.0621723303.21",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0621723303.21"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.440773.3",
"name": [
"Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Zhou",
"givenName": "En-Min",
"id": "sg:person.01320617331.85",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01320617331.85"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.440773.3",
"name": [
"Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Cheng",
"givenName": "Juan",
"id": "sg:person.01077423305.51",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077423305.51"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.440773.3",
"name": [
"Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Yu",
"givenName": "Tian-Tian",
"id": "sg:person.01004265103.17",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01004265103.17"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.440773.3",
"name": [
"Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Zhang",
"givenName": "Jing",
"id": "sg:person.01052400303.55",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01052400303.55"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Life Sciences and Technology, Xinxiang Medical University, 453003, Xinxiang, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.412990.7",
"name": [
"Department of Life Sciences and Technology, Xinxiang Medical University, 453003, Xinxiang, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Feng",
"givenName": "Hui-Gen",
"id": "sg:person.014615126245.53",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014615126245.53"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.440773.3",
"name": [
"Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Tang",
"givenName": "Shu-Kun",
"id": "sg:person.01326213026.53",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01326213026.53"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China",
"id": "http://www.grid.ac/institutes/grid.440773.3",
"name": [
"Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
],
"type": "Organization"
},
"familyName": "Li",
"givenName": "Wen-Jun",
"id": "sg:person.01232160237.47",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01232160237.47"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/bf01731581",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023239976",
"https://doi.org/10.1007/bf01731581"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf01734359",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044065382",
"https://doi.org/10.1007/bf01734359"
],
"type": "CreativeWork"
}
],
"datePublished": "2012-01-25",
"datePublishedReg": "2012-01-25",
"description": "A novel actinomycete, designated as strain YIM 75980T, was isolated from a soil sample collected from a dry-hot river valley in Dongchuan county, Yunnan province, south-west China and was subjected to polyphasic taxonomic characterization. The organism produced circular, smooth, red to black coloured colonies comprising coccoid-shaped cells. Colonies on agar medium lacked mycelia and cells adhered to the agar. Strain YIM 75980T contained meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan and contained galactose, arabinose and glucosamine as the main sugars in the whole-cell hydrolysates. The predominant menaquinone was MK-9 (H4) and the major fatty acids were iso-C15:0, iso-C16:0 and C16:0. The DNA G\u00a0+\u00a0C content of strain YIM 75980T was 73.1\u00a0mol%. Phylogenetic analyses based on 16S rRNA gene sequences clearly showed that strain YIM 75980T formed a distinct clade within the genus Geodermatophilus and was closely related to Geodermatophilus obscurus DSM 43160T (level of similarity, 97.9%). Furthermore, the result of DNA\u2013DNA hybridization between strain YIM 75980T and G. obscurus 43160T demonstrated that this isolate represented a different genomic species in the genus Geodermatophilus. Moreover, the physiological and biochemical data showed the differentiation of strain YIM 75980T from its closest phylogenetic neighbour. Therefore, it is proposed that strain YIM 75980T represents a novel species of the genus Geodermatophilus, for which the name Geodermatophilusnigrescens sp. nov. is proposed. The type strain is YIM 75980T (=CCTCC AA 2011015T\u00a0=JCM 18056T).",
"genre": "article",
"id": "sg:pub.10.1007/s10482-012-9696-0",
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1017348",
"issn": [
"0003-6072",
"1572-9699"
],
"name": "Antonie van Leeuwenhoek",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "4",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "101"
}
],
"keywords": [
"genus Geodermatophilus",
"diagnostic diamino acid",
"closest phylogenetic neighbours",
"meso-diaminopimelic acid",
"whole-cell hydrolysates",
"dry-hot river valley",
"polyphasic taxonomic characterization",
"coccoid-shaped cells",
"cell-wall peptidoglycan",
"rRNA gene sequences",
"different genomic species",
"DNA-DNA hybridization",
"major fatty acids",
"south-west China",
"black-colored colonies",
"predominant menaquinone",
"phylogenetic neighbours",
"novel actinomycete",
"DNA G",
"novel species",
"diamino acid",
"genomic species",
"MK-9",
"distinct clades",
"phylogenetic analysis",
"type strain",
"taxonomic characterization",
"gene sequences",
"dry-hot valley",
"Geodermatophilus",
"coloured colonies",
"Dongchuan County",
"biochemical data",
"agar medium",
"C content",
"species",
"fatty acids",
"colonies",
"main sugars",
"Yunnan Province",
"clade",
"menaquinone",
"cells",
"peptidoglycan",
"soil samples",
"actinomycetes",
"organisms",
"acid",
"sp",
"ISO",
"mycelium",
"hybridization",
"differentiation",
"sequence",
"arabinose",
"River Valley",
"isolates",
"galactose",
"agar",
"glucosamine",
"sugars",
"strains",
"hydrolysate",
"characterization",
"Valley",
"neighbours",
"medium",
"content",
"analysis",
"Province",
"China",
"data",
"results",
"samples",
"County"
],
"name": "Geodermatophilus nigrescens sp. nov., isolated from a dry-hot valley",
"pagination": "811-817",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1043805497"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s10482-012-9696-0"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"22273761"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s10482-012-9696-0",
"https://app.dimensions.ai/details/publication/pub.1043805497"
],
"sdDataset": "articles",
"sdDatePublished": "2022-08-04T17:00",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220804/entities/gbq_results/article/article_583.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1007/s10482-012-9696-0"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s10482-012-9696-0'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s10482-012-9696-0'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s10482-012-9696-0'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s10482-012-9696-0'
This table displays all metadata directly associated to this object as RDF triples.
294 TRIPLES
21 PREDICATES
122 URIs
112 LITERALS
27 BLANK NODES