Geodermatophilus nigrescens sp. nov., isolated from a dry-hot valley View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2012-01-25

AUTHORS

Guo-Xing Nie, Hong Ming, Shuai Li, En-Min Zhou, Juan Cheng, Tian-Tian Yu, Jing Zhang, Hui-Gen Feng, Shu-Kun Tang, Wen-Jun Li

ABSTRACT

A novel actinomycete, designated as strain YIM 75980T, was isolated from a soil sample collected from a dry-hot river valley in Dongchuan county, Yunnan province, south-west China and was subjected to polyphasic taxonomic characterization. The organism produced circular, smooth, red to black coloured colonies comprising coccoid-shaped cells. Colonies on agar medium lacked mycelia and cells adhered to the agar. Strain YIM 75980T contained meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan and contained galactose, arabinose and glucosamine as the main sugars in the whole-cell hydrolysates. The predominant menaquinone was MK-9 (H4) and the major fatty acids were iso-C15:0, iso-C16:0 and C16:0. The DNA G + C content of strain YIM 75980T was 73.1 mol%. Phylogenetic analyses based on 16S rRNA gene sequences clearly showed that strain YIM 75980T formed a distinct clade within the genus Geodermatophilus and was closely related to Geodermatophilus obscurus DSM 43160T (level of similarity, 97.9%). Furthermore, the result of DNA–DNA hybridization between strain YIM 75980T and G. obscurus 43160T demonstrated that this isolate represented a different genomic species in the genus Geodermatophilus. Moreover, the physiological and biochemical data showed the differentiation of strain YIM 75980T from its closest phylogenetic neighbour. Therefore, it is proposed that strain YIM 75980T represents a novel species of the genus Geodermatophilus, for which the name Geodermatophilusnigrescens sp. nov. is proposed. The type strain is YIM 75980T (=CCTCC AA 2011015T =JCM 18056T). More... »

PAGES

811-817

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s10482-012-9696-0

DOI

http://dx.doi.org/10.1007/s10482-012-9696-0

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1043805497

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/22273761


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Biological Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Genetics", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Actinomycetales", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Bacterial Typing Techniques", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Base Composition", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Carbohydrates", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "China", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Cluster Analysis", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Culture Media", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA, Bacterial", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "DNA, Ribosomal", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Diaminopimelic Acid", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Fatty Acids", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Molecular Sequence Data", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Nucleic Acid Hybridization", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Peptidoglycan", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phylogeny", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Pigments, Biological", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "RNA, Ribosomal, 16S", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Sequence Analysis, DNA", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Soil Microbiology", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Vitamin K 2", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "College of Life Sciences, Henan Normal University, 453007, Xinxiang, People\u2019s Republic of China", 
          "id": "http://www.grid.ac/institutes/grid.462338.8", 
          "name": [
            "College of Life Sciences, Henan Normal University, 453007, Xinxiang, People\u2019s Republic of China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Nie", 
        "givenName": "Guo-Xing", 
        "id": "sg:person.01151014063.54", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01151014063.54"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China", 
          "id": "http://www.grid.ac/institutes/grid.440773.3", 
          "name": [
            "Department of Life Sciences and Technology, Xinxiang Medical University, 453003, Xinxiang, People\u2019s Republic of China", 
            "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Ming", 
        "givenName": "Hong", 
        "id": "sg:person.01300774532.49", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01300774532.49"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "College of Life Sciences, Henan Normal University, 453007, Xinxiang, People\u2019s Republic of China", 
          "id": "http://www.grid.ac/institutes/grid.462338.8", 
          "name": [
            "College of Life Sciences, Henan Normal University, 453007, Xinxiang, People\u2019s Republic of China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Li", 
        "givenName": "Shuai", 
        "id": "sg:person.0621723303.21", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0621723303.21"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China", 
          "id": "http://www.grid.ac/institutes/grid.440773.3", 
          "name": [
            "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Zhou", 
        "givenName": "En-Min", 
        "id": "sg:person.01320617331.85", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01320617331.85"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China", 
          "id": "http://www.grid.ac/institutes/grid.440773.3", 
          "name": [
            "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Cheng", 
        "givenName": "Juan", 
        "id": "sg:person.01077423305.51", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077423305.51"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China", 
          "id": "http://www.grid.ac/institutes/grid.440773.3", 
          "name": [
            "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Yu", 
        "givenName": "Tian-Tian", 
        "id": "sg:person.01004265103.17", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01004265103.17"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China", 
          "id": "http://www.grid.ac/institutes/grid.440773.3", 
          "name": [
            "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Zhang", 
        "givenName": "Jing", 
        "id": "sg:person.01052400303.55", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01052400303.55"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Department of Life Sciences and Technology, Xinxiang Medical University, 453003, Xinxiang, People\u2019s Republic of China", 
          "id": "http://www.grid.ac/institutes/grid.412990.7", 
          "name": [
            "Department of Life Sciences and Technology, Xinxiang Medical University, 453003, Xinxiang, People\u2019s Republic of China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Feng", 
        "givenName": "Hui-Gen", 
        "id": "sg:person.014615126245.53", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014615126245.53"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China", 
          "id": "http://www.grid.ac/institutes/grid.440773.3", 
          "name": [
            "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Tang", 
        "givenName": "Shu-Kun", 
        "id": "sg:person.01326213026.53", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01326213026.53"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China", 
          "id": "http://www.grid.ac/institutes/grid.440773.3", 
          "name": [
            "Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People\u2019s Republic of China"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Li", 
        "givenName": "Wen-Jun", 
        "id": "sg:person.01232160237.47", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01232160237.47"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "sg:pub.10.1007/bf01731581", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023239976", 
          "https://doi.org/10.1007/bf01731581"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/bf01734359", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1044065382", 
          "https://doi.org/10.1007/bf01734359"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2012-01-25", 
    "datePublishedReg": "2012-01-25", 
    "description": "A novel actinomycete, designated as strain YIM 75980T, was isolated from a soil sample collected from a dry-hot river valley in Dongchuan county, Yunnan province, south-west China and was subjected to polyphasic taxonomic characterization. The organism produced circular, smooth, red to black coloured colonies comprising coccoid-shaped cells. Colonies on agar medium lacked mycelia and cells adhered to the agar. Strain YIM 75980T contained meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan and contained galactose, arabinose and glucosamine as the main sugars in the whole-cell hydrolysates. The predominant menaquinone was MK-9 (H4) and the major fatty acids were iso-C15:0, iso-C16:0 and C16:0. The DNA G\u00a0+\u00a0C content of strain YIM 75980T was 73.1\u00a0mol%. Phylogenetic analyses based on 16S rRNA gene sequences clearly showed that strain YIM 75980T formed a distinct clade within the genus Geodermatophilus and was closely related to Geodermatophilus obscurus DSM 43160T (level of similarity, 97.9%). Furthermore, the result of DNA\u2013DNA hybridization between strain YIM 75980T and G. obscurus 43160T demonstrated that this isolate represented a different genomic species in the genus Geodermatophilus. Moreover, the physiological and biochemical data showed the differentiation of strain YIM 75980T from its closest phylogenetic neighbour. Therefore, it is proposed that strain YIM 75980T represents a novel species of the genus Geodermatophilus, for which the name Geodermatophilusnigrescens sp. nov. is proposed. The type strain is YIM 75980T (=CCTCC AA 2011015T\u00a0=JCM 18056T).", 
    "genre": "article", 
    "id": "sg:pub.10.1007/s10482-012-9696-0", 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1017348", 
        "issn": [
          "0003-6072", 
          "1572-9699"
        ], 
        "name": "Antonie van Leeuwenhoek", 
        "publisher": "Springer Nature", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "4", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "101"
      }
    ], 
    "keywords": [
      "genus Geodermatophilus", 
      "diagnostic diamino acid", 
      "closest phylogenetic neighbours", 
      "meso-diaminopimelic acid", 
      "whole-cell hydrolysates", 
      "dry-hot river valley", 
      "polyphasic taxonomic characterization", 
      "coccoid-shaped cells", 
      "cell-wall peptidoglycan", 
      "rRNA gene sequences", 
      "different genomic species", 
      "DNA-DNA hybridization", 
      "major fatty acids", 
      "south-west China", 
      "black-colored colonies", 
      "predominant menaquinone", 
      "phylogenetic neighbours", 
      "novel actinomycete", 
      "DNA G", 
      "novel species", 
      "diamino acid", 
      "genomic species", 
      "MK-9", 
      "distinct clades", 
      "phylogenetic analysis", 
      "type strain", 
      "taxonomic characterization", 
      "gene sequences", 
      "dry-hot valley", 
      "Geodermatophilus", 
      "coloured colonies", 
      "Dongchuan County", 
      "biochemical data", 
      "agar medium", 
      "C content", 
      "species", 
      "fatty acids", 
      "colonies", 
      "main sugars", 
      "Yunnan Province", 
      "clade", 
      "menaquinone", 
      "cells", 
      "peptidoglycan", 
      "soil samples", 
      "actinomycetes", 
      "organisms", 
      "acid", 
      "sp", 
      "ISO", 
      "mycelium", 
      "hybridization", 
      "differentiation", 
      "sequence", 
      "arabinose", 
      "River Valley", 
      "isolates", 
      "galactose", 
      "agar", 
      "glucosamine", 
      "sugars", 
      "strains", 
      "hydrolysate", 
      "characterization", 
      "Valley", 
      "neighbours", 
      "medium", 
      "content", 
      "analysis", 
      "Province", 
      "China", 
      "data", 
      "results", 
      "samples", 
      "County"
    ], 
    "name": "Geodermatophilus nigrescens sp. nov., isolated from a dry-hot valley", 
    "pagination": "811-817", 
    "productId": [
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1043805497"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s10482-012-9696-0"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "22273761"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s10482-012-9696-0", 
      "https://app.dimensions.ai/details/publication/pub.1043805497"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2022-08-04T17:00", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-springernature-scigraph/baseset/20220804/entities/gbq_results/article/article_583.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://doi.org/10.1007/s10482-012-9696-0"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s10482-012-9696-0'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s10482-012-9696-0'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s10482-012-9696-0'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s10482-012-9696-0'


 

This table displays all metadata directly associated to this object as RDF triples.

294 TRIPLES      21 PREDICATES      122 URIs      112 LITERALS      27 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s10482-012-9696-0 schema:about N06c7b4a1ba4943a3982ea4ec5846071e
2 N123cac7796394fbdbe7931a32fb932cd
3 N1364b1da961d4693ba4041f8dee999c9
4 N2258fef131454ef39cb534c86441a817
5 N25ec655f3b304d5fa142d3b3eaadfda5
6 N2eda1111dbe3492fa32e8778c2e0f9f7
7 N33c54074a0314511b40d632de5b5c899
8 N457249d9c063470d9fcbb2db7c733734
9 N53fccf6b682f4bc484a96ed52aa16e51
10 N721882908507437d80411c525495d6af
11 N83a406f616ab4d39b9b59076db2b5a95
12 N8be0e0756555420a8d24998c5b8139f6
13 N9d31225086a0437eaac4e6599aab77ce
14 N9ed0b452f8a64f22b290640af34a2a18
15 Nc15a50ab266840e581afb98c0b0ca094
16 Nc679bfd285174e5caef29ced679c246b
17 Ne996b398a9604fe7a8c87b6d4d692d46
18 Nf4c3473deb2e487fb61ecb0ad4224727
19 Nf6e7cd75c9c546188020429e54e82d74
20 Nf791c6d95b9b44788b01b8c554fb8ee9
21 anzsrc-for:06
22 anzsrc-for:0604
23 schema:author N4ba6161dc8f54fd181753e8522b27887
24 schema:citation sg:pub.10.1007/bf01731581
25 sg:pub.10.1007/bf01734359
26 schema:datePublished 2012-01-25
27 schema:datePublishedReg 2012-01-25
28 schema:description A novel actinomycete, designated as strain YIM 75980T, was isolated from a soil sample collected from a dry-hot river valley in Dongchuan county, Yunnan province, south-west China and was subjected to polyphasic taxonomic characterization. The organism produced circular, smooth, red to black coloured colonies comprising coccoid-shaped cells. Colonies on agar medium lacked mycelia and cells adhered to the agar. Strain YIM 75980T contained meso-diaminopimelic acid as the diagnostic diamino acid in the cell-wall peptidoglycan and contained galactose, arabinose and glucosamine as the main sugars in the whole-cell hydrolysates. The predominant menaquinone was MK-9 (H4) and the major fatty acids were iso-C15:0, iso-C16:0 and C16:0. The DNA G + C content of strain YIM 75980T was 73.1 mol%. Phylogenetic analyses based on 16S rRNA gene sequences clearly showed that strain YIM 75980T formed a distinct clade within the genus Geodermatophilus and was closely related to Geodermatophilus obscurus DSM 43160T (level of similarity, 97.9%). Furthermore, the result of DNA–DNA hybridization between strain YIM 75980T and G. obscurus 43160T demonstrated that this isolate represented a different genomic species in the genus Geodermatophilus. Moreover, the physiological and biochemical data showed the differentiation of strain YIM 75980T from its closest phylogenetic neighbour. Therefore, it is proposed that strain YIM 75980T represents a novel species of the genus Geodermatophilus, for which the name Geodermatophilusnigrescens sp. nov. is proposed. The type strain is YIM 75980T (=CCTCC AA 2011015T =JCM 18056T).
29 schema:genre article
30 schema:isAccessibleForFree false
31 schema:isPartOf N8d28e64fcc8f473682871a1865f90508
32 Nd6e013845bd44d038e12fed4fb7a3907
33 sg:journal.1017348
34 schema:keywords C content
35 China
36 County
37 DNA G
38 DNA-DNA hybridization
39 Dongchuan County
40 Geodermatophilus
41 ISO
42 MK-9
43 Province
44 River Valley
45 Valley
46 Yunnan Province
47 acid
48 actinomycetes
49 agar
50 agar medium
51 analysis
52 arabinose
53 biochemical data
54 black-colored colonies
55 cell-wall peptidoglycan
56 cells
57 characterization
58 clade
59 closest phylogenetic neighbours
60 coccoid-shaped cells
61 colonies
62 coloured colonies
63 content
64 data
65 diagnostic diamino acid
66 diamino acid
67 different genomic species
68 differentiation
69 distinct clades
70 dry-hot river valley
71 dry-hot valley
72 fatty acids
73 galactose
74 gene sequences
75 genomic species
76 genus Geodermatophilus
77 glucosamine
78 hybridization
79 hydrolysate
80 isolates
81 main sugars
82 major fatty acids
83 medium
84 menaquinone
85 meso-diaminopimelic acid
86 mycelium
87 neighbours
88 novel actinomycete
89 novel species
90 organisms
91 peptidoglycan
92 phylogenetic analysis
93 phylogenetic neighbours
94 polyphasic taxonomic characterization
95 predominant menaquinone
96 rRNA gene sequences
97 results
98 samples
99 sequence
100 soil samples
101 south-west China
102 sp
103 species
104 strains
105 sugars
106 taxonomic characterization
107 type strain
108 whole-cell hydrolysates
109 schema:name Geodermatophilus nigrescens sp. nov., isolated from a dry-hot valley
110 schema:pagination 811-817
111 schema:productId N1efe3154c4174ac1b815a3d02a4a99a6
112 N4627f1a0b6044a0db904e665d5b3c8ae
113 Nb5933b6c2a97400b82618a69dacd5db3
114 schema:sameAs https://app.dimensions.ai/details/publication/pub.1043805497
115 https://doi.org/10.1007/s10482-012-9696-0
116 schema:sdDatePublished 2022-08-04T17:00
117 schema:sdLicense https://scigraph.springernature.com/explorer/license/
118 schema:sdPublisher N8de53ae1eb314b46be547a2b8ddc6bb6
119 schema:url https://doi.org/10.1007/s10482-012-9696-0
120 sgo:license sg:explorer/license/
121 sgo:sdDataset articles
122 rdf:type schema:ScholarlyArticle
123 N06c7b4a1ba4943a3982ea4ec5846071e schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
124 schema:name Phylogeny
125 rdf:type schema:DefinedTerm
126 N072efebe30f54d719d88c64216fe21bf rdf:first sg:person.0621723303.21
127 rdf:rest Nd6c29db3ae534cccaf01c3b93270293b
128 N123cac7796394fbdbe7931a32fb932cd schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
129 schema:name Base Composition
130 rdf:type schema:DefinedTerm
131 N1364b1da961d4693ba4041f8dee999c9 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
132 schema:name Actinomycetales
133 rdf:type schema:DefinedTerm
134 N1379bcb51e1345558f47f31804b55b21 rdf:first sg:person.01052400303.55
135 rdf:rest Na2c4622e52b84f7e94187be14037fbfb
136 N1efe3154c4174ac1b815a3d02a4a99a6 schema:name pubmed_id
137 schema:value 22273761
138 rdf:type schema:PropertyValue
139 N2258fef131454ef39cb534c86441a817 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
140 schema:name Pigments, Biological
141 rdf:type schema:DefinedTerm
142 N25ec655f3b304d5fa142d3b3eaadfda5 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
143 schema:name Nucleic Acid Hybridization
144 rdf:type schema:DefinedTerm
145 N2eda1111dbe3492fa32e8778c2e0f9f7 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
146 schema:name Cluster Analysis
147 rdf:type schema:DefinedTerm
148 N33c54074a0314511b40d632de5b5c899 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
149 schema:name DNA, Ribosomal
150 rdf:type schema:DefinedTerm
151 N3c4e47244d424a699ecba1397f58cca9 rdf:first sg:person.01300774532.49
152 rdf:rest N072efebe30f54d719d88c64216fe21bf
153 N457249d9c063470d9fcbb2db7c733734 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
154 schema:name Soil Microbiology
155 rdf:type schema:DefinedTerm
156 N4627f1a0b6044a0db904e665d5b3c8ae schema:name doi
157 schema:value 10.1007/s10482-012-9696-0
158 rdf:type schema:PropertyValue
159 N4ba6161dc8f54fd181753e8522b27887 rdf:first sg:person.01151014063.54
160 rdf:rest N3c4e47244d424a699ecba1397f58cca9
161 N53fccf6b682f4bc484a96ed52aa16e51 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
162 schema:name Culture Media
163 rdf:type schema:DefinedTerm
164 N721882908507437d80411c525495d6af schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
165 schema:name Sequence Analysis, DNA
166 rdf:type schema:DefinedTerm
167 N83a406f616ab4d39b9b59076db2b5a95 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
168 schema:name Molecular Sequence Data
169 rdf:type schema:DefinedTerm
170 N8be0e0756555420a8d24998c5b8139f6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
171 schema:name Carbohydrates
172 rdf:type schema:DefinedTerm
173 N8d28e64fcc8f473682871a1865f90508 schema:issueNumber 4
174 rdf:type schema:PublicationIssue
175 N8de53ae1eb314b46be547a2b8ddc6bb6 schema:name Springer Nature - SN SciGraph project
176 rdf:type schema:Organization
177 N9061165a581c4a1b85a5b9ddd22497e6 rdf:first sg:person.01004265103.17
178 rdf:rest N1379bcb51e1345558f47f31804b55b21
179 N9d31225086a0437eaac4e6599aab77ce schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
180 schema:name Bacterial Typing Techniques
181 rdf:type schema:DefinedTerm
182 N9ed0b452f8a64f22b290640af34a2a18 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
183 schema:name RNA, Ribosomal, 16S
184 rdf:type schema:DefinedTerm
185 Na2c4622e52b84f7e94187be14037fbfb rdf:first sg:person.014615126245.53
186 rdf:rest Ncc3e84e38d8444deb9917bdbbad9b3e6
187 Nb5933b6c2a97400b82618a69dacd5db3 schema:name dimensions_id
188 schema:value pub.1043805497
189 rdf:type schema:PropertyValue
190 Nc15a50ab266840e581afb98c0b0ca094 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
191 schema:name Peptidoglycan
192 rdf:type schema:DefinedTerm
193 Nc679bfd285174e5caef29ced679c246b schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
194 schema:name Fatty Acids
195 rdf:type schema:DefinedTerm
196 Ncc3e84e38d8444deb9917bdbbad9b3e6 rdf:first sg:person.01326213026.53
197 rdf:rest Ne0d2a94301d4406ebd383a80b98a8bcc
198 Nd6c29db3ae534cccaf01c3b93270293b rdf:first sg:person.01320617331.85
199 rdf:rest Ne8edd861bf9e44fbb55da62d7b34743d
200 Nd6e013845bd44d038e12fed4fb7a3907 schema:volumeNumber 101
201 rdf:type schema:PublicationVolume
202 Ne0d2a94301d4406ebd383a80b98a8bcc rdf:first sg:person.01232160237.47
203 rdf:rest rdf:nil
204 Ne8edd861bf9e44fbb55da62d7b34743d rdf:first sg:person.01077423305.51
205 rdf:rest N9061165a581c4a1b85a5b9ddd22497e6
206 Ne996b398a9604fe7a8c87b6d4d692d46 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
207 schema:name DNA, Bacterial
208 rdf:type schema:DefinedTerm
209 Nf4c3473deb2e487fb61ecb0ad4224727 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
210 schema:name Vitamin K 2
211 rdf:type schema:DefinedTerm
212 Nf6e7cd75c9c546188020429e54e82d74 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
213 schema:name China
214 rdf:type schema:DefinedTerm
215 Nf791c6d95b9b44788b01b8c554fb8ee9 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
216 schema:name Diaminopimelic Acid
217 rdf:type schema:DefinedTerm
218 anzsrc-for:06 schema:inDefinedTermSet anzsrc-for:
219 schema:name Biological Sciences
220 rdf:type schema:DefinedTerm
221 anzsrc-for:0604 schema:inDefinedTermSet anzsrc-for:
222 schema:name Genetics
223 rdf:type schema:DefinedTerm
224 sg:journal.1017348 schema:issn 0003-6072
225 1572-9699
226 schema:name Antonie van Leeuwenhoek
227 schema:publisher Springer Nature
228 rdf:type schema:Periodical
229 sg:person.01004265103.17 schema:affiliation grid-institutes:grid.440773.3
230 schema:familyName Yu
231 schema:givenName Tian-Tian
232 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01004265103.17
233 rdf:type schema:Person
234 sg:person.01052400303.55 schema:affiliation grid-institutes:grid.440773.3
235 schema:familyName Zhang
236 schema:givenName Jing
237 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01052400303.55
238 rdf:type schema:Person
239 sg:person.01077423305.51 schema:affiliation grid-institutes:grid.440773.3
240 schema:familyName Cheng
241 schema:givenName Juan
242 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01077423305.51
243 rdf:type schema:Person
244 sg:person.01151014063.54 schema:affiliation grid-institutes:grid.462338.8
245 schema:familyName Nie
246 schema:givenName Guo-Xing
247 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01151014063.54
248 rdf:type schema:Person
249 sg:person.01232160237.47 schema:affiliation grid-institutes:grid.440773.3
250 schema:familyName Li
251 schema:givenName Wen-Jun
252 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01232160237.47
253 rdf:type schema:Person
254 sg:person.01300774532.49 schema:affiliation grid-institutes:grid.440773.3
255 schema:familyName Ming
256 schema:givenName Hong
257 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01300774532.49
258 rdf:type schema:Person
259 sg:person.01320617331.85 schema:affiliation grid-institutes:grid.440773.3
260 schema:familyName Zhou
261 schema:givenName En-Min
262 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01320617331.85
263 rdf:type schema:Person
264 sg:person.01326213026.53 schema:affiliation grid-institutes:grid.440773.3
265 schema:familyName Tang
266 schema:givenName Shu-Kun
267 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01326213026.53
268 rdf:type schema:Person
269 sg:person.014615126245.53 schema:affiliation grid-institutes:grid.412990.7
270 schema:familyName Feng
271 schema:givenName Hui-Gen
272 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014615126245.53
273 rdf:type schema:Person
274 sg:person.0621723303.21 schema:affiliation grid-institutes:grid.462338.8
275 schema:familyName Li
276 schema:givenName Shuai
277 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0621723303.21
278 rdf:type schema:Person
279 sg:pub.10.1007/bf01731581 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023239976
280 https://doi.org/10.1007/bf01731581
281 rdf:type schema:CreativeWork
282 sg:pub.10.1007/bf01734359 schema:sameAs https://app.dimensions.ai/details/publication/pub.1044065382
283 https://doi.org/10.1007/bf01734359
284 rdf:type schema:CreativeWork
285 grid-institutes:grid.412990.7 schema:alternateName Department of Life Sciences and Technology, Xinxiang Medical University, 453003, Xinxiang, People’s Republic of China
286 schema:name Department of Life Sciences and Technology, Xinxiang Medical University, 453003, Xinxiang, People’s Republic of China
287 rdf:type schema:Organization
288 grid-institutes:grid.440773.3 schema:alternateName Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People’s Republic of China
289 schema:name Department of Life Sciences and Technology, Xinxiang Medical University, 453003, Xinxiang, People’s Republic of China
290 Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education and Laboratory for Conservation and Utilization of Bio-resources, Yunnan Institute of Microbiology, Yunnan University, 650091, Kunming, People’s Republic of China
291 rdf:type schema:Organization
292 grid-institutes:grid.462338.8 schema:alternateName College of Life Sciences, Henan Normal University, 453007, Xinxiang, People’s Republic of China
293 schema:name College of Life Sciences, Henan Normal University, 453007, Xinxiang, People’s Republic of China
294 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...