Ontology type: schema:ScholarlyArticle
2018-03
AUTHORSTaketo Fujimoto, Shinji Yasuoka, Yoshiyuki Aono, Takato Nakayama, Takehiro Ohki, Mitsuru Sayama, Tetsuo Maoka
ABSTRACTThe taxonomic assignment of Japanese potato blackleg isolates of Dickeya spp. has not been confirmed after the changes in their former name, Erwinia chrysanthemi. Therefore, we investigated and identified 23 representative isolates of Dickeya spp. from symptomatic stems of potatoes in Japan, with biochemical tests and phylogenetic sequence analysis using recA, dnaX, rpoD, gyrB, and 16S rDNA sequences. Results of our biochemical tests showed that all isolates can be assigned to phenon 5 and biovar 1, which are associated with D. dianthicola. Based on the recA, dnaX, rpoD, gyrB, and 16S rDNA sequences, all isolates are in the same clade with D. dianthicola and were clearly distinguished from D. chrysanthemi, D. dadantii, D. dadantii subsp. dieffenbachiae, D. solani, D. zeae, and D. paradisiaca. Therefore, we conclude that Dickeya spp. isolated from potatoes with blackleg symptoms in Japan are D. dianthicola. More... »
PAGES124-136
http://scigraph.springernature.com/pub.10.1007/s10327-018-0772-9
DOIhttp://dx.doi.org/10.1007/s10327-018-0772-9
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1100711068
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0607",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Plant Biology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "National Agricultural Research Center for Hokkaido Region",
"id": "https://www.grid.ac/institutes/grid.419106.b",
"name": [
"Hokkaido Agricultural Research Center, National Agriculture and Food Research Organization (HARC/NARO), Hitsujigaoka, Toyohira-ku, 062-8555, Sapporo, Hokkaido, Japan"
],
"type": "Organization"
},
"familyName": "Fujimoto",
"givenName": "Taketo",
"id": "sg:person.014062673012.45",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014062673012.45"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Hokkaido Research Organization",
"id": "https://www.grid.ac/institutes/grid.452441.2",
"name": [
"Tokachi Agricultural Experiment Station, Hokkaido Research Organization, 082-0081, Memuro, Hokkaido, Japan"
],
"type": "Organization"
},
"familyName": "Yasuoka",
"givenName": "Shinji",
"id": "sg:person.010512227366.15",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010512227366.15"
],
"type": "Person"
},
{
"affiliation": {
"name": [
"Hokkaido-Chuo Station, Center for Seeds and Seedlings, NARO, Nishinosato, 061-1102, Kitahiroshima, Hokkaido, Japan"
],
"type": "Organization"
},
"familyName": "Aono",
"givenName": "Yoshiyuki",
"id": "sg:person.015455634012.22",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015455634012.22"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National Agricultural Research Center for Hokkaido Region",
"id": "https://www.grid.ac/institutes/grid.419106.b",
"name": [
"Hokkaido Agricultural Research Center, National Agriculture and Food Research Organization (HARC/NARO), Hitsujigaoka, Toyohira-ku, 062-8555, Sapporo, Hokkaido, Japan"
],
"type": "Organization"
},
"familyName": "Nakayama",
"givenName": "Takato",
"id": "sg:person.016016223524.41",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.016016223524.41"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National Agricultural Research Center for Hokkaido Region",
"id": "https://www.grid.ac/institutes/grid.419106.b",
"name": [
"Hokkaido Agricultural Research Center, National Agriculture and Food Research Organization (HARC/NARO), Hitsujigaoka, Toyohira-ku, 062-8555, Sapporo, Hokkaido, Japan"
],
"type": "Organization"
},
"familyName": "Ohki",
"givenName": "Takehiro",
"id": "sg:person.0662613033.30",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0662613033.30"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National Agricultural Research Center for Hokkaido Region",
"id": "https://www.grid.ac/institutes/grid.419106.b",
"name": [
"Hokkaido Agricultural Research Center, National Agriculture and Food Research Organization (HARC/NARO), Hitsujigaoka, Toyohira-ku, 062-8555, Sapporo, Hokkaido, Japan"
],
"type": "Organization"
},
"familyName": "Sayama",
"givenName": "Mitsuru",
"id": "sg:person.07616333017.27",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07616333017.27"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National Agricultural Research Center for Hokkaido Region",
"id": "https://www.grid.ac/institutes/grid.419106.b",
"name": [
"Hokkaido Agricultural Research Center, National Agriculture and Food Research Organization (HARC/NARO), Hitsujigaoka, Toyohira-ku, 062-8555, Sapporo, Hokkaido, Japan"
],
"type": "Organization"
},
"familyName": "Maoka",
"givenName": "Tetsuo",
"id": "sg:person.01237204305.40",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01237204305.40"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1093/molbev/mst197",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001444669"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-3059.2011.02508.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005824312"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3186/jjphytopath.51.315",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005949824"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10658-008-9325-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009615067",
"https://doi.org/10.1007/s10658-008-9325-y"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10327-013-0440-z",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010372040",
"https://doi.org/10.1007/s10327-013-0440-z"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-3059.2011.02427.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015516075"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-3059.2011.02546.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015783834"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1744-7348.2006.00045.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021874226"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10658-007-9260-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023630363",
"https://doi.org/10.1007/s10658-007-9260-3"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-2672.2004.02173.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029403731"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10327-014-0511-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033060751",
"https://doi.org/10.1007/s10327-014-0511-9"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1051/agro:19900408",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033920477",
"https://doi.org/10.1051/agro:19900408"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10658-009-9479-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036569156",
"https://doi.org/10.1007/s10658-009-9479-2"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10658-009-9479-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036569156",
"https://doi.org/10.1007/s10658-009-9479-2"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0723-2020(96)80076-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042102063"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/7.6.1513",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046335196"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-3059.2011.02470.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049302778"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/aab.12020",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052628945"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-2338.1987.tb00002.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053501226"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/pdis-04-15-0439-re",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060089724"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/pdis-04-15-0439-re",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060089724"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/pdis-06-16-0928-pdn",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060090608"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/phyto-97-9-1150",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060100552"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/phyto-69-324",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060105720"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/00207713-49-1-87",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060349906"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/ijs.0.02423-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060383450"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/ijs.0.02713-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060383837"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/ijs.0.02791-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060383947"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/ijs.0.035055-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060384519"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/ijs.0.64184-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060387113"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jb.173.2.697-703.1991",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062719841"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jb.179.13.4438-4442.1997",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062726056"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1082952152",
"type": "CreativeWork"
}
],
"datePublished": "2018-03",
"datePublishedReg": "2018-03-01",
"description": "The taxonomic assignment of Japanese potato blackleg isolates of Dickeya spp. has not been confirmed after the changes in their former name, Erwinia chrysanthemi. Therefore, we investigated and identified 23 representative isolates of Dickeya spp. from symptomatic stems of potatoes in Japan, with biochemical tests and phylogenetic sequence analysis using recA, dnaX, rpoD, gyrB, and 16S rDNA sequences. Results of our biochemical tests showed that all isolates can be assigned to phenon 5 and biovar 1, which are associated with D. dianthicola. Based on the recA, dnaX, rpoD, gyrB, and 16S rDNA sequences, all isolates are in the same clade with D. dianthicola and were clearly distinguished from D. chrysanthemi, D. dadantii, D. dadantii subsp. dieffenbachiae, D. solani, D. zeae, and D. paradisiaca. Therefore, we conclude that Dickeya spp. isolated from potatoes with blackleg symptoms in Japan are D. dianthicola.",
"genre": "research_article",
"id": "sg:pub.10.1007/s10327-018-0772-9",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1312372",
"issn": [
"1345-2630",
"1610-739X"
],
"name": "Journal of General Plant Pathology",
"type": "Periodical"
},
{
"issueNumber": "2",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "84"
}
],
"name": "Biochemical, physiological, and molecular characterization of Dickeya dianthicola (formerly named Erwinia chrysanthemi) causing potato blackleg disease in Japan",
"pagination": "124-136",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"3c6008b0ee43f0081cb8d9c8df7ff46db1d65b1bc04e44b99f0b848341cd0515"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s10327-018-0772-9"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1100711068"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s10327-018-0772-9",
"https://app.dimensions.ai/details/publication/pub.1100711068"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T22:47",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8690_00000603.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1007/s10327-018-0772-9"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s10327-018-0772-9'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s10327-018-0772-9'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s10327-018-0772-9'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s10327-018-0772-9'
This table displays all metadata directly associated to this object as RDF triples.
206 TRIPLES
21 PREDICATES
58 URIs
19 LITERALS
7 BLANK NODES