Phylogenetic and evolutionary analysis of A-, B-, C- and E-class MADS-box genes in the basal eudicot Platanus acerifolia View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2012-05

AUTHORS

Zhineng Li, Jiaqi Zhang, Guofeng Liu, Xiaomei Li, Chen Lu, Junwei Zhang, Manzhu Bao

ABSTRACT

London plane tree (Platanus acerifolia Willd.) is an important member of the Platanaceae family, being popular as an urban landscaping tree. Here, we report the isolation of five MADS-box genes from the basal angiosperm, Platanus acerifolia. Sequence and phylogenetic analyses identified FRUITFUL-like, APETELA3-like, AGAMOUS-like, SEPALLATA1-like and SEPALLATA3-like sequences and, hence, we term the respective Platanus acerifolia genes as PlacFUL, PlacAP3, PlacAG, PlacSEP1 and PlacSEP3. From these identities we infer that they represent candidate A-, B-, C-class and two E-class genes, respectively. The conserved MIK or MIKC domains from the nucleotide and protein sequences of PlacFUL, PlacAP3, PlacAG, PlacSEP1 and PlacSEP3 were analyzed using the maximum-likelihood, MrBayes and neighbor-joining methods. The results confirmed P. acerifolia as a basal eudicot. Expression pattern was determined by reverse transcriptase PCR, which showed all paralogous genes have distinct expression patterns, suggesting that they had undergone functional divergence. More... »

PAGES

381-393

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s10265-011-0456-4

DOI

http://dx.doi.org/10.1007/s10265-011-0456-4

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1042147531

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/22068722


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