Proteomic profiling of developing wheat heads under water-stress View Full Text


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Article Info

DATE

2020-07-17

AUTHORS

Shahidul Islam, Penghao Wang, Delphine Vincent, Javed M. Khan, Angela Juhasz, Dean Diepeveen, Richard J. Lipscombe, Wujun Ma, Rudi Appels

ABSTRACT

A replicated iTRAQ (isobaric tags for relative and absolute quantification) study on developing wheat heads from two doubled haploid (DH) lines identified from a cross between cv Westonia x cv Kauz characterized the proteome changes influenced by reproductive stage water-stress. All lines were exposed to 10 days of water-stress from early booting (Zadok 40), with sample sets taken from five head developmental stages. Two sample groups (water-stressed and control) account for 120 samples that required 18 eight-plex iTRAQ runs. Based on the IWGSC RefSeq v1 wheat assembly, among the 4592 identified proteins, a total of 132 proteins showed a significant response to water-stress, including the down-regulation of a mitochondrial Rho GTPase, a regulator of intercellular fundamental biological processes (7.5 fold) and cell division protein FtsZ at anthesis (6.0 fold). Up-regulated proteins included inosine-5′-monophosphate dehydrogenase (3.83 fold) and glycerophosphodiester phosphodiesterase (4.05 fold). The Pre-FHE and FHE stages (full head emerged) of head development were differentiated by 391 proteins and 270 proteins differentiated the FHE and Post-FHE stages. Water-stress during meiosis affected seed setting with 27% and 6% reduction in the progeny DH105 and DH299 respectively. Among the 77 proteins that differentiated between the two DH lines, 7 proteins were significantly influenced by water-stress and correlated with the seed set phenotype response of the DH lines to water-stress (e.g. the up-regulation of a subtilisin-like protease in DH 299 relative to DH 105). This study provided unique insights into the biological changes in developing wheat head that occur during water-stress. More... »

PAGES

695-710

References to SciGraph publications

  • 2019-06-27. The repressive role of Arabidopsis H2A.Z in transcriptional regulation depends on AtBMI1 activity in NATURE COMMUNICATIONS
  • 2011-11-04. Mass Spectrometry for Protein Quantification in Biomarker Discovery in FUNCTIONAL GENOMICS
  • 2018-12-19. Physiological and proteomic analysis on long-term drought resistance of cassava (Manihot esculenta Crantz) in SCIENTIFIC REPORTS
  • 2011-11-24. A food systems approach to researching food security and its interactions with global environmental change in FOOD SECURITY
  • 2008-04-06. The genome structure of the 1-FEH genes in wheat (Triticum aestivum L.): new markers to track stem carbohydrates and grain filling QTLs in breeding in MOLECULAR BREEDING
  • 2014-12-11. Effect of over-and under-expression of glyceraldehyde 3-phosphate dehydrogenase on tolerance of plants to water-deficit stress in PLANT CELL, TISSUE AND ORGAN CULTURE (PCTOC)
  • 2005-12-20. Over-expression of tobacco NtHSP70-1 contributes to drought-stress tolerance in plants in PLANT CELL REPORTS
  • 2005-01-01. limma: Linear Models for Microarray Data in BIOINFORMATICS AND COMPUTATIONAL BIOLOGY SOLUTIONS USING R AND BIOCONDUCTOR
  • 2005-03. Hsp70 chaperones: Cellular functions and molecular mechanism in CELLULAR AND MOLECULAR LIFE SCIENCES
  • 2009-03-28. Transcriptome pathways unique to dehydration tolerant relatives of modern wheat in FUNCTIONAL & INTEGRATIVE GENOMICS
  • 2013-02-27. Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI–MS/MS in PLANT MOLECULAR BIOLOGY
  • 2019-02-26. Analysis of wheat gene expression related to the oxidative stress response and signal transduction under short-term osmotic stress in SCIENTIFIC REPORTS
  • 2006-09-14. Plant dehydrins — Tissue location, structure and function in CELLULAR & MOLECULAR BIOLOGY LETTERS
  • 2018-11-16. Hotspots in the genomic architecture of field drought responses in wheat as breeding targets in FUNCTIONAL & INTEGRATIVE GENOMICS
  • Identifiers

    URI

    http://scigraph.springernature.com/pub.10.1007/s10142-020-00746-9

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    http://dx.doi.org/10.1007/s10142-020-00746-9

    DIMENSIONS

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    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/32681185


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    26 schema:description A replicated iTRAQ (isobaric tags for relative and absolute quantification) study on developing wheat heads from two doubled haploid (DH) lines identified from a cross between cv Westonia x cv Kauz characterized the proteome changes influenced by reproductive stage water-stress. All lines were exposed to 10 days of water-stress from early booting (Zadok 40), with sample sets taken from five head developmental stages. Two sample groups (water-stressed and control) account for 120 samples that required 18 eight-plex iTRAQ runs. Based on the IWGSC RefSeq v1 wheat assembly, among the 4592 identified proteins, a total of 132 proteins showed a significant response to water-stress, including the down-regulation of a mitochondrial Rho GTPase, a regulator of intercellular fundamental biological processes (7.5 fold) and cell division protein FtsZ at anthesis (6.0 fold). Up-regulated proteins included inosine-5′-monophosphate dehydrogenase (3.83 fold) and glycerophosphodiester phosphodiesterase (4.05 fold). The Pre-FHE and FHE stages (full head emerged) of head development were differentiated by 391 proteins and 270 proteins differentiated the FHE and Post-FHE stages. Water-stress during meiosis affected seed setting with 27% and 6% reduction in the progeny DH105 and DH299 respectively. Among the 77 proteins that differentiated between the two DH lines, 7 proteins were significantly influenced by water-stress and correlated with the seed set phenotype response of the DH lines to water-stress (e.g. the up-regulation of a subtilisin-like protease in DH 299 relative to DH 105). This study provided unique insights into the biological changes in developing wheat head that occur during water-stress.
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