Phylogenetic classification of transporters and other membrane proteins from Saccharomyces cerevisiae View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2002-09

AUTHORS

Benoît De Hertogh, Elvira Carvajal, Emmanuel Talla, Bernard Dujon, Philippe Baret, André Goffeau

ABSTRACT

. On the basis of functional and phylogenetic criteria, we have identified a total of 229 subfamilies and 111 singletons predicted to carry out transport or other membrane functions in Saccharomyces cerevisiae. We have extended the Transporter Classification (TC) and created a Membrane Classification (MC) for non-transporter membrane proteins. Using the preliminary phylogenetic digits X, Y, Z (for new families, subfamilies, and clusters, respectively), we allocated a five-digit number to 850 proteins predicted to contain more than two transmembrane domains. Compared with a previous TC of the yeast genome, we classified an additional set of 538 membrane proteins (transporters and non-transporters) and identified 111 novel phylogenetic subfamilies. More... »

PAGES

154-170

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s10142-002-0060-8

DOI

http://dx.doi.org/10.1007/s10142-002-0060-8

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1049200877

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/12192589


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