Ontology type: schema:ScholarlyArticle
2019-10-26
AUTHORSNoor Hassan, Alexandre M. Anesio, Muhammad Rafiq, Jens Holtvoeth, Ian Bull, Christopher J. Williamson, Fariha Hasan
ABSTRACTIn the present study, cyanobacterium isolate CHS1 isolated from Hopar glacier, Pakistan, was analyzed for the first time for cell membrane fatty acids and production of pigments. Sequencing of the 16-23S intergenetic region confirmed identification of the isolate CHS1 as Nodularia spumigena. All chlorophyll and carotenoid pigments were quantified using high-performance liquid chromatography and experiments to test tolerance against a range of physico-chemical conditions were conducted. Likewise, the fatty acid profile of the cell membrane CHS1 was analyzed using gas chromatography and mass spectroscopy. The cyanobacterium isolate CHS1 demonstrated tolerance to 8 g/L% NaCl, 35°C and pH 5–9. The characteristic polyunsaturated fatty acid (PUFA) of isolate CHS1, C18:4, was observed in fatty acid methyl esters (FAMEs) extracted from the cell membrane. CHS1 was capable of producing saturated fatty acids (SFA) (e.g., C16:0), monounsaturated fatty acids (MUFA) (e.g., C18:1) and polyunsaturated fatty acids (e.g., C20:5) in the cell membrane. In this study, we hypothesize that one mechanism of cold adaptation displayed by isolate CHS1 is the accumulation of high amounts of PUFA in the cell membrane. More... »
PAGES135-145
http://scigraph.springernature.com/pub.10.1007/s00792-019-01141-4
DOIhttp://dx.doi.org/10.1007/s00792-019-01141-4
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1122119199
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/31655895
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0601",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biochemistry and Cell Biology",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cell Membrane",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Fatty Acids",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Ice Cover",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Nodularia",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Pakistan",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Bristol Glaciology Centre, School of Geographical Sciences, Faculty of Science, University of Bristol, BS8 1SS, Bristol, UK",
"id": "http://www.grid.ac/institutes/grid.5337.2",
"name": [
"Applied, Environmental and Geomicrobiology Laboratory, Department of Microbiology, Quaid-i-Azam University, 45320, Islamabad, Pakistan",
"Bristol Glaciology Centre, School of Geographical Sciences, Faculty of Science, University of Bristol, BS8 1SS, Bristol, UK"
],
"type": "Organization"
},
"familyName": "Hassan",
"givenName": "Noor",
"id": "sg:person.015036011023.79",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015036011023.79"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Environmental Science, Aarhus University, 4000, Roskilde, Denmark",
"id": "http://www.grid.ac/institutes/grid.7048.b",
"name": [
"Bristol Glaciology Centre, School of Geographical Sciences, Faculty of Science, University of Bristol, BS8 1SS, Bristol, UK",
"Department of Environmental Science, Aarhus University, 4000, Roskilde, Denmark"
],
"type": "Organization"
},
"familyName": "Anesio",
"givenName": "Alexandre M.",
"id": "sg:person.01133272213.63",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01133272213.63"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Microbiology, Balochistan University of Information Technology, Engineering and Management Sciences, Quetta, Baluchistan, Pakistan",
"id": "http://www.grid.ac/institutes/grid.440526.1",
"name": [
"Applied, Environmental and Geomicrobiology Laboratory, Department of Microbiology, Quaid-i-Azam University, 45320, Islamabad, Pakistan",
"Department of Microbiology, Balochistan University of Information Technology, Engineering and Management Sciences, Quetta, Baluchistan, Pakistan"
],
"type": "Organization"
},
"familyName": "Rafiq",
"givenName": "Muhammad",
"id": "sg:person.01271422565.54",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01271422565.54"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Organic Geochemistry Unit, School of Chemistry, Faculty of Science, University of Bristol, BS8 1TS, Bristol, UK",
"id": "http://www.grid.ac/institutes/grid.5337.2",
"name": [
"Organic Geochemistry Unit, School of Chemistry, Faculty of Science, University of Bristol, BS8 1TS, Bristol, UK"
],
"type": "Organization"
},
"familyName": "Holtvoeth",
"givenName": "Jens",
"id": "sg:person.0666313630.44",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0666313630.44"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Organic Geochemistry Unit, School of Chemistry, Faculty of Science, University of Bristol, BS8 1TS, Bristol, UK",
"id": "http://www.grid.ac/institutes/grid.5337.2",
"name": [
"Organic Geochemistry Unit, School of Chemistry, Faculty of Science, University of Bristol, BS8 1TS, Bristol, UK"
],
"type": "Organization"
},
"familyName": "Bull",
"givenName": "Ian",
"id": "sg:person.01070230235.19",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01070230235.19"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Bristol Glaciology Centre, School of Geographical Sciences, Faculty of Science, University of Bristol, BS8 1SS, Bristol, UK",
"id": "http://www.grid.ac/institutes/grid.5337.2",
"name": [
"Bristol Glaciology Centre, School of Geographical Sciences, Faculty of Science, University of Bristol, BS8 1SS, Bristol, UK"
],
"type": "Organization"
},
"familyName": "Williamson",
"givenName": "Christopher J.",
"id": "sg:person.01032717063.49",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01032717063.49"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Applied, Environmental and Geomicrobiology Laboratory, Department of Microbiology, Quaid-i-Azam University, 45320, Islamabad, Pakistan",
"id": "http://www.grid.ac/institutes/grid.412621.2",
"name": [
"Applied, Environmental and Geomicrobiology Laboratory, Department of Microbiology, Quaid-i-Azam University, 45320, Islamabad, Pakistan"
],
"type": "Organization"
},
"familyName": "Hasan",
"givenName": "Fariha",
"id": "sg:person.01164027246.43",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01164027246.43"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/978-94-011-0227-8_1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036773894",
"https://doi.org/10.1007/978-94-011-0227-8_1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-3-8274-2737-3",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1109715230",
"https://doi.org/10.1007/978-3-8274-2737-3"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-3-7091-6542-3_2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1009558879",
"https://doi.org/10.1007/978-3-7091-6542-3_2"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00248-013-0332-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013773610",
"https://doi.org/10.1007/s00248-013-0332-y"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00401984",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021906715",
"https://doi.org/10.1007/bf00401984"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ismej.2009.113",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029687538",
"https://doi.org/10.1038/ismej.2009.113"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00248-008-9427-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044067795",
"https://doi.org/10.1007/s00248-008-9427-2"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00248-001-1044-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032256700",
"https://doi.org/10.1007/s00248-001-1044-2"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00008855",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024522463",
"https://doi.org/10.1007/bf00008855"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00025411",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036694231",
"https://doi.org/10.1007/bf00025411"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10811-005-5767-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030534246",
"https://doi.org/10.1007/s10811-005-5767-1"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ismej.2011.20",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050293864",
"https://doi.org/10.1038/ismej.2011.20"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/23005",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1047452854",
"https://doi.org/10.1038/23005"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00645123",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015996276",
"https://doi.org/10.1007/bf00645123"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11160-014-9366-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034465220",
"https://doi.org/10.1007/s11160-014-9366-6"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00762212",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031996527",
"https://doi.org/10.1007/bf00762212"
],
"type": "CreativeWork"
}
],
"datePublished": "2019-10-26",
"datePublishedReg": "2019-10-26",
"description": "In the present study, cyanobacterium isolate CHS1 isolated from Hopar glacier, Pakistan, was analyzed for the first time for cell membrane fatty acids and production of pigments. Sequencing of the 16-23S intergenetic region confirmed identification of the isolate CHS1 as Nodularia spumigena. All chlorophyll and carotenoid pigments were quantified using high-performance liquid chromatography and experiments to test tolerance against a range of physico-chemical conditions were conducted. Likewise, the fatty acid profile of the cell membrane CHS1 was analyzed using gas chromatography and mass spectroscopy. The cyanobacterium\u00a0isolate CHS1 demonstrated tolerance to 8 g/L% NaCl, 35\u00b0C and pH 5\u20139. The characteristic polyunsaturated fatty acid (PUFA) of isolate CHS1, C18:4, was observed in fatty acid methyl esters (FAMEs) extracted from the cell membrane. CHS1 was capable of producing saturated fatty acids (SFA) (e.g., C16:0), monounsaturated fatty acids (MUFA) (e.g., C18:1) and polyunsaturated fatty acids (e.g., C20:5) in the cell membrane. In this study, we hypothesize that one mechanism of cold adaptation displayed by isolate CHS1 is the accumulation of high amounts of PUFA in the cell membrane.",
"genre": "article",
"id": "sg:pub.10.1007/s00792-019-01141-4",
"inLanguage": "en",
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1116821",
"issn": [
"1431-0651",
"1433-4909"
],
"name": "Extremophiles",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "1",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "24"
}
],
"keywords": [
"membrane fatty acids",
"cell membrane fatty acids",
"cell membrane",
"fatty acids",
"intergenetic regions",
"production of pigments",
"cold adaptation",
"Nodularia spumigena",
"CHS1",
"pigment composition",
"carotenoid pigments",
"fatty acid profile",
"fatty acid methyl esters",
"physico-chemical conditions",
"acid profile",
"membrane",
"pigments",
"cyanobacterium",
"spumigena",
"acid",
"tolerance",
"sequencing",
"chlorophyll",
"first time",
"high amounts",
"accumulation",
"adaptation",
"acid methyl ester",
"PUFA",
"identification",
"present study",
"chromatography",
"NaCl",
"mechanism",
"production",
"methyl ester",
"region",
"composition",
"mass spectroscopy",
"high-performance liquid chromatography",
"liquid chromatography",
"study",
"esters",
"profile",
"experiments",
"amount",
"conditions",
"range",
"gas chromatography",
"Pakistan",
"time",
"spectroscopy"
],
"name": "Cell membrane fatty acid and pigment composition of the psychrotolerant cyanobacterium Nodularia spumigena CHS1 isolated from Hopar glacier, Pakistan",
"pagination": "135-145",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1122119199"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s00792-019-01141-4"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"31655895"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s00792-019-01141-4",
"https://app.dimensions.ai/details/publication/pub.1122119199"
],
"sdDataset": "articles",
"sdDatePublished": "2022-05-20T07:36",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220519/entities/gbq_results/article/article_829.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1007/s00792-019-01141-4"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00792-019-01141-4'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00792-019-01141-4'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00792-019-01141-4'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00792-019-01141-4'
This table displays all metadata directly associated to this object as RDF triples.
254 TRIPLES
22 PREDICATES
99 URIs
75 LITERALS
12 BLANK NODES