Evolutionary dynamics of satellite DNA repeats from Phaseolus beans View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2017-03

AUTHORS

Tiago Ribeiro, Karla G. B. dos Santos, Manon M. S. Richard, Mireille Sévignac, Vincent Thareau, Valérie Geffroy, Andrea Pedrosa-Harand

ABSTRACT

Common bean (Phaseolus vulgaris) subtelomeres are highly enriched for khipu, the main satellite DNA identified so far in this genome. Here, we comparatively investigate khipu genomic organization in Phaseolus species from different clades. Additionally, we identified and characterized another satellite repeat, named jumper, associated to khipu. A mixture of P. vulgaris khipu clones hybridized in situ confirmed the presence of khipu-like sequences on subterminal chromosome regions in all Phaseolus species, with differences in the number and intensity of signals between species and when species-specific clones were used. Khipu is present as multimers of ∼500 bp and sequence analyses of cloned fragments revealed close relationship among khipu repeats. The new repeat, named jumper, is a 170-bp satellite sequence present in all Phaseolus species and inserted into the nontranscribed spacer (NTS) of the 5S rDNA in the P. vulgaris genome. Nevertheless, jumper was found as a high-copy repeat at subtelomeres and/or pericentromeres in the Phaseolus microcarpus lineage only. Our data argue for khipu as an important subtelomeric satellite DNA in the genus and for a complex satellite repeat composition of P. microcarpus subtelomeres, which also contain jumper. Furthermore, the differential amplification of these repeats in subtelomeres or pericentromeres reinforces the presence of a dynamic satellite DNA library in Phaseolus. More... »

PAGES

791-801

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00709-016-0993-8

DOI

http://dx.doi.org/10.1007/s00709-016-0993-8

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1049912136

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/27335007


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