Ontology type: schema:ScholarlyArticle
2018-10
AUTHORSNicolás Bejerman, Soledad de Breuil, Claudia Nome
ABSTRACTA single-stranded DNA (ssDNA) virus was detected in Yerba mate samples showing chlorotic linear patterns, chlorotic rings and vein yellowing. The full-genome sequences of six different isolates of this ssDNA circular virus were obtained, which share > 99% sequence identity with each other. The newly identified virus has been tentatively named as yerba mate-associated circular DNA virus (YMaCV). The 2707 nt-long viral genome has two and three open reading frame on its complementary and virion-sense strands, respectively. The coat protein is more similar to that of mastreviruses (44% identity), whereas the replication-associated protein of YMaCV is more similar (49% identity) to that encoded by a recently described, unclassified ssDNA virus isolated on trees in Brazil. This is the first report of a circular DNA virus associated with yerba mate. Its unique genome organization and phylogenetic relationships indicates that YMaCV represents a distinct evolutionary lineage within the ssDNA viruses and therefore this virus should be classified as a member of a new species within an unassigned genus or family. More... »
PAGES2811-2815
http://scigraph.springernature.com/pub.10.1007/s00705-018-3910-y
DOIhttp://dx.doi.org/10.1007/s00705-018-3910-y
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1104396595
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/29876781
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "National Scientific and Technical Research Council",
"id": "https://www.grid.ac/institutes/grid.423606.5",
"name": [
"Instituto de Patolog\u00eda Vegetal, Centro de Investigaciones Agropecuarias, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IPAVE-CIAP-INTA), Camino 60 Cuadras Km 5,5 (X5020ICA), C\u00f3rdoba, Argentina",
"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Godoy Cruz 2290 (1425 FBQ) CABA, Buenos Aires, Argentina"
],
"type": "Organization"
},
"familyName": "Bejerman",
"givenName": "Nicol\u00e1s",
"id": "sg:person.01134251050.21",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01134251050.21"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National Scientific and Technical Research Council",
"id": "https://www.grid.ac/institutes/grid.423606.5",
"name": [
"Instituto de Patolog\u00eda Vegetal, Centro de Investigaciones Agropecuarias, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IPAVE-CIAP-INTA), Camino 60 Cuadras Km 5,5 (X5020ICA), C\u00f3rdoba, Argentina",
"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas (CONICET), Godoy Cruz 2290 (1425 FBQ) CABA, Buenos Aires, Argentina"
],
"type": "Organization"
},
"familyName": "de Breuil",
"givenName": "Soledad",
"id": "sg:person.01261201363.06",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01261201363.06"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "National Agricultural Technology Institute",
"id": "https://www.grid.ac/institutes/grid.419231.c",
"name": [
"Instituto de Patolog\u00eda Vegetal, Centro de Investigaciones Agropecuarias, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IPAVE-CIAP-INTA), Camino 60 Cuadras Km 5,5 (X5020ICA), C\u00f3rdoba, Argentina"
],
"type": "Organization"
},
"familyName": "Nome",
"givenName": "Claudia",
"id": "sg:person.01166376763.37",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01166376763.37"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1093/molbev/msw054",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012564990"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0108277",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025670543"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkh340",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1025846396"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/ve/vev003",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1034021905"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/bti263",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038701851"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.virusres.2015.07.005",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051904109"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/vir.0.000175",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060398057"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00705-017-3268-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1083847926",
"https://doi.org/10.1007/s00705-017-3268-6"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00705-017-3268-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1083847926",
"https://doi.org/10.1007/s00705-017-3268-6"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00705-017-3363-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085083210",
"https://doi.org/10.1007/s00705-017-3363-8"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00705-017-3363-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085083210",
"https://doi.org/10.1007/s00705-017-3363-8"
],
"type": "CreativeWork"
}
],
"datePublished": "2018-10",
"datePublishedReg": "2018-10-01",
"description": "A single-stranded DNA (ssDNA) virus was detected in Yerba mate samples showing chlorotic linear patterns, chlorotic rings and vein yellowing. The full-genome sequences of six different isolates of this ssDNA circular virus were obtained, which share >\u200999% sequence identity with each other. The newly identified virus has been tentatively named as yerba mate-associated circular DNA virus (YMaCV). The 2707 nt-long viral genome has two and three open reading frame on its complementary and virion-sense strands, respectively. The coat protein is more similar to that of mastreviruses (44% identity), whereas the replication-associated protein of YMaCV is more similar (49% identity) to that encoded by a recently described, unclassified ssDNA virus isolated on trees in Brazil. This is the first report of a circular DNA virus associated with yerba mate. Its unique genome organization and phylogenetic relationships indicates that YMaCV represents a distinct evolutionary lineage within the ssDNA viruses and therefore this virus should be classified as a member of a new species within an unassigned genus or family.",
"genre": "research_article",
"id": "sg:pub.10.1007/s00705-018-3910-y",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1083335",
"issn": [
"0304-8608",
"1432-8798"
],
"name": "Archives of Virology",
"type": "Periodical"
},
{
"issueNumber": "10",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "163"
}
],
"name": "Identification and molecular characterization of a novel circular single-stranded DNA virus associated with yerba mate in Argentina",
"pagination": "2811-2815",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"006e5aafaa590eddd83e52cf483f5d55a4601a4a368c2e2d2c5da26e3d17f3d4"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"29876781"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"7506870"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s00705-018-3910-y"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1104396595"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s00705-018-3910-y",
"https://app.dimensions.ai/details/publication/pub.1104396595"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T20:11",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8681_00000609.jsonl",
"type": "ScholarlyArticle",
"url": "https://link.springer.com/10.1007%2Fs00705-018-3910-y"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00705-018-3910-y'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00705-018-3910-y'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00705-018-3910-y'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00705-018-3910-y'
This table displays all metadata directly associated to this object as RDF triples.
116 TRIPLES
21 PREDICATES
38 URIs
21 LITERALS
9 BLANK NODES