Molecular characterization of a beet ringspot nepovirus isolated from Begonia ricinifolia in Hungary View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2017-11

AUTHORS

Szilvia Kis, Pál Salamon, Viktor Kis, György Szittya

ABSTRACT

A nepovirus was isolated from Begonia ricinifolia showing chlorotic ringspot and line pattern symptoms. The purified virus had spherical particles of ca. 30 nm and contained a single coat protein subunit of ca. 56 kDa. The complete nucleotide sequence of the bipartite viral genome was determined. RNA 1 is 7394 nucleotides long, flanked by 5' and 3' untranslated regions (UTR), and followed by a 3' poly-A tail. It contains a single 6810 nt long open reading frame (ORF), which is translated into a 255 kDa polyprotein composed of 2269 amino acids. The 4684 nt long RNA 2 has a 4053 nt long ORF which encodes a single polyprotein of 1350 amino acids with a molecular weight of 149 kDa. Sequence comparisons revealed that the virus isolated from B. ricinifolia has the highest sequence similarity to beet ringspot virus and should be considered as a strain of BRSV. This is the first report on the occurrence of BRSV in B. ricinifolia and the presence of this virus outside Scotland. More... »

PAGES

3559-3562

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00705-017-3521-z

DOI

http://dx.doi.org/10.1007/s00705-017-3521-z

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1091146616

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/28812162


Indexing Status Check whether this publication has been indexed by Scopus and Web Of Science using the SN Indexing Status Tool
Incoming Citations Browse incoming citations for this publication using opencitations.net

JSON-LD is the canonical representation for SciGraph data.

TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT

[
  {
    "@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json", 
    "about": [
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1108", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Medical Microbiology", 
        "type": "DefinedTerm"
      }, 
      {
        "id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11", 
        "inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/", 
        "name": "Medical and Health Sciences", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Begoniaceae", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Hungary", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Nepovirus", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Phylogeny", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "Plant Diseases", 
        "type": "DefinedTerm"
      }, 
      {
        "inDefinedTermSet": "https://www.nlm.nih.gov/mesh/", 
        "name": "RNA, Viral", 
        "type": "DefinedTerm"
      }
    ], 
    "author": [
      {
        "affiliation": {
          "alternateName": "Agricultural Biotechnology Institute", 
          "id": "https://www.grid.ac/institutes/grid.417744.5", 
          "name": [
            "Department for Plant Biotechnology, National Agricultural Research and Innovation Centre, Agricultural Biotechnology Institute, Szent-Gy\u00f6rgyi Albert ut 4, 2100, G\u00f6d\u00f6ll\u0151, Hungary"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kis", 
        "givenName": "Szilvia", 
        "id": "sg:person.010536702747.72", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010536702747.72"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Agricultural Biotechnology Institute", 
          "id": "https://www.grid.ac/institutes/grid.417744.5", 
          "name": [
            "Department for Plant Biotechnology, National Agricultural Research and Innovation Centre, Agricultural Biotechnology Institute, Szent-Gy\u00f6rgyi Albert ut 4, 2100, G\u00f6d\u00f6ll\u0151, Hungary"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Salamon", 
        "givenName": "P\u00e1l", 
        "id": "sg:person.0620265075.73", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0620265075.73"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "MTA Institute of Experimental Medicine", 
          "id": "https://www.grid.ac/institutes/grid.419012.f", 
          "name": [
            "Department of Anatomy, Cell and Developmental Biology, E\u00f6tv\u00f6s Lor\u00e1nd University of Sciences, Budapest, Hungary", 
            "Laboratory of Cellular Neurophysiology, Institute of Experimental Medicine of the Hungarian Academy of Sciences, Szigony utca 43, 1083, Budapest, Hungary"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Kis", 
        "givenName": "Viktor", 
        "id": "sg:person.0720346406.41", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0720346406.41"
        ], 
        "type": "Person"
      }, 
      {
        "affiliation": {
          "alternateName": "Agricultural Biotechnology Institute", 
          "id": "https://www.grid.ac/institutes/grid.417744.5", 
          "name": [
            "Department for Plant Biotechnology, National Agricultural Research and Innovation Centre, Agricultural Biotechnology Institute, Szent-Gy\u00f6rgyi Albert ut 4, 2100, G\u00f6d\u00f6ll\u0151, Hungary"
          ], 
          "type": "Organization"
        }, 
        "familyName": "Szittya", 
        "givenName": "Gy\u00f6rgy", 
        "id": "sg:person.01142110753.09", 
        "sameAs": [
          "https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01142110753.09"
        ], 
        "type": "Person"
      }
    ], 
    "citation": [
      {
        "id": "https://doi.org/10.1002/elps.200500722", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1007484545"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/bs.aivir.2016.08.009", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1010601970"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1093/molbev/msw054", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1012564990"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1038/1801055b0", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1016889861", 
          "https://doi.org/10.1038/1801055b0"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "sg:pub.10.1007/s007050050389", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1023769274", 
          "https://doi.org/10.1007/s007050050389"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0168-9525(00)02024-2", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1035021159"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1016/s0168-1702(00)00178-7", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1048224421"
        ], 
        "type": "CreativeWork"
      }, 
      {
        "id": "https://doi.org/10.1099/0022-1317-69-1-233", 
        "sameAs": [
          "https://app.dimensions.ai/details/publication/pub.1060356560"
        ], 
        "type": "CreativeWork"
      }
    ], 
    "datePublished": "2017-11", 
    "datePublishedReg": "2017-11-01", 
    "description": "A nepovirus was isolated from Begonia ricinifolia showing chlorotic ringspot and line pattern symptoms. The purified virus had spherical particles of ca. 30 nm and contained a single coat protein subunit of ca. 56 kDa. The complete nucleotide sequence of the bipartite viral genome was determined. RNA 1 is 7394 nucleotides long, flanked by 5' and 3' untranslated regions (UTR), and followed by a 3' poly-A tail. It contains a single 6810 nt long open reading frame (ORF), which is translated into a 255 kDa polyprotein composed of 2269 amino acids. The 4684 nt long RNA 2 has a 4053 nt long ORF which encodes a single polyprotein of 1350 amino acids with a molecular weight of 149 kDa. Sequence comparisons revealed that the virus isolated from B. ricinifolia has the highest sequence similarity to beet ringspot virus and should be considered as a strain of BRSV. This is the first report on the occurrence of BRSV in B. ricinifolia and the presence of this virus outside Scotland.", 
    "genre": "research_article", 
    "id": "sg:pub.10.1007/s00705-017-3521-z", 
    "inLanguage": [
      "en"
    ], 
    "isAccessibleForFree": false, 
    "isPartOf": [
      {
        "id": "sg:journal.1083335", 
        "issn": [
          "0304-8608", 
          "1432-8798"
        ], 
        "name": "Archives of Virology", 
        "type": "Periodical"
      }, 
      {
        "issueNumber": "11", 
        "type": "PublicationIssue"
      }, 
      {
        "type": "PublicationVolume", 
        "volumeNumber": "162"
      }
    ], 
    "name": "Molecular characterization of a beet ringspot nepovirus isolated from Begonia ricinifolia in Hungary", 
    "pagination": "3559-3562", 
    "productId": [
      {
        "name": "readcube_id", 
        "type": "PropertyValue", 
        "value": [
          "6522d5f1492e20b5935d06e7908be638501f33700134ed08ad6dadb221ff2cbd"
        ]
      }, 
      {
        "name": "pubmed_id", 
        "type": "PropertyValue", 
        "value": [
          "28812162"
        ]
      }, 
      {
        "name": "nlm_unique_id", 
        "type": "PropertyValue", 
        "value": [
          "7506870"
        ]
      }, 
      {
        "name": "doi", 
        "type": "PropertyValue", 
        "value": [
          "10.1007/s00705-017-3521-z"
        ]
      }, 
      {
        "name": "dimensions_id", 
        "type": "PropertyValue", 
        "value": [
          "pub.1091146616"
        ]
      }
    ], 
    "sameAs": [
      "https://doi.org/10.1007/s00705-017-3521-z", 
      "https://app.dimensions.ai/details/publication/pub.1091146616"
    ], 
    "sdDataset": "articles", 
    "sdDatePublished": "2019-04-11T10:04", 
    "sdLicense": "https://scigraph.springernature.com/explorer/license/", 
    "sdPublisher": {
      "name": "Springer Nature - SN SciGraph project", 
      "type": "Organization"
    }, 
    "sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000347_0000000347/records_89826_00000003.jsonl", 
    "type": "ScholarlyArticle", 
    "url": "https://link.springer.com/10.1007%2Fs00705-017-3521-z"
  }
]
 

Download the RDF metadata as:  json-ld nt turtle xml License info

HOW TO GET THIS DATA PROGRAMMATICALLY:

JSON-LD is a popular format for linked data which is fully compatible with JSON.

curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00705-017-3521-z'

N-Triples is a line-based linked data format ideal for batch operations.

curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00705-017-3521-z'

Turtle is a human-readable linked data format.

curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00705-017-3521-z'

RDF/XML is a standard XML format for linked data.

curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00705-017-3521-z'


 

This table displays all metadata directly associated to this object as RDF triples.

144 TRIPLES      21 PREDICATES      43 URIs      27 LITERALS      15 BLANK NODES

Subject Predicate Object
1 sg:pub.10.1007/s00705-017-3521-z schema:about N25fa5672cbef4aaea718df6c0faaa0f3
2 N6321896b42ae4d48b45537a17f61a666
3 N64008a38d61e4184b7effee6b70d86c6
4 N661c34b3f2fc4c6a91c67790f358df00
5 Nd82878f0958a4516af00c7eac8010fa8
6 Nd991d33509474e6ca4a58cd747eb6d08
7 anzsrc-for:11
8 anzsrc-for:1108
9 schema:author Nf5129ef649814274b1438f3c021d68e2
10 schema:citation sg:pub.10.1007/s007050050389
11 sg:pub.10.1038/1801055b0
12 https://doi.org/10.1002/elps.200500722
13 https://doi.org/10.1016/bs.aivir.2016.08.009
14 https://doi.org/10.1016/s0168-1702(00)00178-7
15 https://doi.org/10.1016/s0168-9525(00)02024-2
16 https://doi.org/10.1093/molbev/msw054
17 https://doi.org/10.1099/0022-1317-69-1-233
18 schema:datePublished 2017-11
19 schema:datePublishedReg 2017-11-01
20 schema:description A nepovirus was isolated from Begonia ricinifolia showing chlorotic ringspot and line pattern symptoms. The purified virus had spherical particles of ca. 30 nm and contained a single coat protein subunit of ca. 56 kDa. The complete nucleotide sequence of the bipartite viral genome was determined. RNA 1 is 7394 nucleotides long, flanked by 5' and 3' untranslated regions (UTR), and followed by a 3' poly-A tail. It contains a single 6810 nt long open reading frame (ORF), which is translated into a 255 kDa polyprotein composed of 2269 amino acids. The 4684 nt long RNA 2 has a 4053 nt long ORF which encodes a single polyprotein of 1350 amino acids with a molecular weight of 149 kDa. Sequence comparisons revealed that the virus isolated from B. ricinifolia has the highest sequence similarity to beet ringspot virus and should be considered as a strain of BRSV. This is the first report on the occurrence of BRSV in B. ricinifolia and the presence of this virus outside Scotland.
21 schema:genre research_article
22 schema:inLanguage en
23 schema:isAccessibleForFree false
24 schema:isPartOf Ne3840994067e44a28a4e06f156790c75
25 Nec4d9ac7b8bf4e97ad98690a02b46931
26 sg:journal.1083335
27 schema:name Molecular characterization of a beet ringspot nepovirus isolated from Begonia ricinifolia in Hungary
28 schema:pagination 3559-3562
29 schema:productId N225d4b688a314eed922e37e72c6496eb
30 N435f465bf94f4824b94e656e6b116c67
31 N48dd83853203404d89c605d4ea36b024
32 Nbbccf48f24444175a11d24e36871cf6a
33 Nfd2f966a76864edfabdde7de261f0393
34 schema:sameAs https://app.dimensions.ai/details/publication/pub.1091146616
35 https://doi.org/10.1007/s00705-017-3521-z
36 schema:sdDatePublished 2019-04-11T10:04
37 schema:sdLicense https://scigraph.springernature.com/explorer/license/
38 schema:sdPublisher Nb377d2d45fa14225946f1433307fc5f9
39 schema:url https://link.springer.com/10.1007%2Fs00705-017-3521-z
40 sgo:license sg:explorer/license/
41 sgo:sdDataset articles
42 rdf:type schema:ScholarlyArticle
43 N225d4b688a314eed922e37e72c6496eb schema:name doi
44 schema:value 10.1007/s00705-017-3521-z
45 rdf:type schema:PropertyValue
46 N25fa5672cbef4aaea718df6c0faaa0f3 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
47 schema:name Nepovirus
48 rdf:type schema:DefinedTerm
49 N2f9ede00e03c4dd692c4a6c044099c58 rdf:first sg:person.0720346406.41
50 rdf:rest N67be837509944101ab33c28159ef280b
51 N435f465bf94f4824b94e656e6b116c67 schema:name dimensions_id
52 schema:value pub.1091146616
53 rdf:type schema:PropertyValue
54 N48dd83853203404d89c605d4ea36b024 schema:name nlm_unique_id
55 schema:value 7506870
56 rdf:type schema:PropertyValue
57 N6321896b42ae4d48b45537a17f61a666 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
58 schema:name Phylogeny
59 rdf:type schema:DefinedTerm
60 N64008a38d61e4184b7effee6b70d86c6 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
61 schema:name Hungary
62 rdf:type schema:DefinedTerm
63 N661c34b3f2fc4c6a91c67790f358df00 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
64 schema:name Begoniaceae
65 rdf:type schema:DefinedTerm
66 N67be837509944101ab33c28159ef280b rdf:first sg:person.01142110753.09
67 rdf:rest rdf:nil
68 Na9f7e066200b4ad5be18f799397e909d rdf:first sg:person.0620265075.73
69 rdf:rest N2f9ede00e03c4dd692c4a6c044099c58
70 Nb377d2d45fa14225946f1433307fc5f9 schema:name Springer Nature - SN SciGraph project
71 rdf:type schema:Organization
72 Nbbccf48f24444175a11d24e36871cf6a schema:name pubmed_id
73 schema:value 28812162
74 rdf:type schema:PropertyValue
75 Nd82878f0958a4516af00c7eac8010fa8 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
76 schema:name RNA, Viral
77 rdf:type schema:DefinedTerm
78 Nd991d33509474e6ca4a58cd747eb6d08 schema:inDefinedTermSet https://www.nlm.nih.gov/mesh/
79 schema:name Plant Diseases
80 rdf:type schema:DefinedTerm
81 Ne3840994067e44a28a4e06f156790c75 schema:volumeNumber 162
82 rdf:type schema:PublicationVolume
83 Nec4d9ac7b8bf4e97ad98690a02b46931 schema:issueNumber 11
84 rdf:type schema:PublicationIssue
85 Nf5129ef649814274b1438f3c021d68e2 rdf:first sg:person.010536702747.72
86 rdf:rest Na9f7e066200b4ad5be18f799397e909d
87 Nfd2f966a76864edfabdde7de261f0393 schema:name readcube_id
88 schema:value 6522d5f1492e20b5935d06e7908be638501f33700134ed08ad6dadb221ff2cbd
89 rdf:type schema:PropertyValue
90 anzsrc-for:11 schema:inDefinedTermSet anzsrc-for:
91 schema:name Medical and Health Sciences
92 rdf:type schema:DefinedTerm
93 anzsrc-for:1108 schema:inDefinedTermSet anzsrc-for:
94 schema:name Medical Microbiology
95 rdf:type schema:DefinedTerm
96 sg:journal.1083335 schema:issn 0304-8608
97 1432-8798
98 schema:name Archives of Virology
99 rdf:type schema:Periodical
100 sg:person.010536702747.72 schema:affiliation https://www.grid.ac/institutes/grid.417744.5
101 schema:familyName Kis
102 schema:givenName Szilvia
103 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.010536702747.72
104 rdf:type schema:Person
105 sg:person.01142110753.09 schema:affiliation https://www.grid.ac/institutes/grid.417744.5
106 schema:familyName Szittya
107 schema:givenName György
108 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01142110753.09
109 rdf:type schema:Person
110 sg:person.0620265075.73 schema:affiliation https://www.grid.ac/institutes/grid.417744.5
111 schema:familyName Salamon
112 schema:givenName Pál
113 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0620265075.73
114 rdf:type schema:Person
115 sg:person.0720346406.41 schema:affiliation https://www.grid.ac/institutes/grid.419012.f
116 schema:familyName Kis
117 schema:givenName Viktor
118 schema:sameAs https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0720346406.41
119 rdf:type schema:Person
120 sg:pub.10.1007/s007050050389 schema:sameAs https://app.dimensions.ai/details/publication/pub.1023769274
121 https://doi.org/10.1007/s007050050389
122 rdf:type schema:CreativeWork
123 sg:pub.10.1038/1801055b0 schema:sameAs https://app.dimensions.ai/details/publication/pub.1016889861
124 https://doi.org/10.1038/1801055b0
125 rdf:type schema:CreativeWork
126 https://doi.org/10.1002/elps.200500722 schema:sameAs https://app.dimensions.ai/details/publication/pub.1007484545
127 rdf:type schema:CreativeWork
128 https://doi.org/10.1016/bs.aivir.2016.08.009 schema:sameAs https://app.dimensions.ai/details/publication/pub.1010601970
129 rdf:type schema:CreativeWork
130 https://doi.org/10.1016/s0168-1702(00)00178-7 schema:sameAs https://app.dimensions.ai/details/publication/pub.1048224421
131 rdf:type schema:CreativeWork
132 https://doi.org/10.1016/s0168-9525(00)02024-2 schema:sameAs https://app.dimensions.ai/details/publication/pub.1035021159
133 rdf:type schema:CreativeWork
134 https://doi.org/10.1093/molbev/msw054 schema:sameAs https://app.dimensions.ai/details/publication/pub.1012564990
135 rdf:type schema:CreativeWork
136 https://doi.org/10.1099/0022-1317-69-1-233 schema:sameAs https://app.dimensions.ai/details/publication/pub.1060356560
137 rdf:type schema:CreativeWork
138 https://www.grid.ac/institutes/grid.417744.5 schema:alternateName Agricultural Biotechnology Institute
139 schema:name Department for Plant Biotechnology, National Agricultural Research and Innovation Centre, Agricultural Biotechnology Institute, Szent-Györgyi Albert ut 4, 2100, Gödöllő, Hungary
140 rdf:type schema:Organization
141 https://www.grid.ac/institutes/grid.419012.f schema:alternateName MTA Institute of Experimental Medicine
142 schema:name Department of Anatomy, Cell and Developmental Biology, Eötvös Loránd University of Sciences, Budapest, Hungary
143 Laboratory of Cellular Neurophysiology, Institute of Experimental Medicine of the Hungarian Academy of Sciences, Szigony utca 43, 1083, Budapest, Hungary
144 rdf:type schema:Organization
 




Preview window. Press ESC to close (or click here)


...