The genome sequence of a novel RNA virus in Adelphocoris suturalis View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2017-01-20

AUTHORS

Xinlian Li, Pengjun Xu, Xianming Yang, He Yuan, Lizhen Chen, Yanhui Lu

ABSTRACT

The complete genome of a novel virus found in Adelphocoris suturalis was determined by RNA-seq and named Adelphocoris suturalis-associated virus 1 (ASV1). ASV1 has a single-stranded RNA genome of 10,845 nucleotides in length and contains five putative open reading frames (ORFs). ORF1 encodes a polypeptide of 2592 amino acids (aa) and contains four conserved domains: a viral RNA methyltransferase domain, an FtsJ-like methyltransferase domain, a viral RNA helicase domain and an RNA-dependent RNA polymerase domain. ORF2, ORF3, ORF4 and ORF5 encode polypeptides of 190, 461, 103 and 159 aa, respectively, of which only ORF5 contains a conserved domain, the Tobacco mosaic virus-coat superfamily. Phylogenetic analysis with the deduced amino acid sequences indicated that ASV1 clusters with the Drosophila-related Boutonnet virus. The similar genomic structure and high bootstrap value identified in the maximum-likelihood tree suggest that ASV1 (possibly alongside Boutonnet virus) could be considered the prototype of a new taxon of unclassified insect viruses. The prevalence of ASV1 infection in wild populations of A. suturalis was at a low level (6.60%, 14 positives from 212 samples). More... »

PAGES

1397-1401

References to SciGraph publications

  • 2013-11-09. The family Parvoviridae in ARCHIVES OF VIROLOGY
  • 2011-05-15. Full-length transcriptome assembly from RNA-Seq data without a reference genome in NATURE BIOTECHNOLOGY
  • 2015-06-16. Mining the microbial dark matter in NATURE
  • 2009-10-27. RNA-seq: from technology to biology in CELLULAR AND MOLECULAR LIFE SCIENCES
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    http://scigraph.springernature.com/pub.10.1007/s00705-016-3211-2

    DOI

    http://dx.doi.org/10.1007/s00705-016-3211-2

    DIMENSIONS

    https://app.dimensions.ai/details/publication/pub.1053948114

    PUBMED

    https://www.ncbi.nlm.nih.gov/pubmed/28108803


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