Genome sequence analysis of five Canadian isolates of strawberry mottle virus reveals extensive intra-species diversity and a longer RNA2 with ... View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2016-06

AUTHORS

Basdeo Bhagwat, Virginia Dickison, Xinlun Ding, Melanie Walker, Michael Bernardy, Michel Bouthillier, Alexa Creelman, Robyn DeYoung, Yinzi Li, Xianzhou Nie, Aiming Wang, Yu Xiang, Hélène Sanfaçon

ABSTRACT

In this study, we report the genome sequence of five isolates of strawberry mottle virus (family Secoviridae, order Picornavirales) from strawberry field samples with decline symptoms collected in Eastern Canada. The Canadian isolates differed from the previously characterized European isolate 1134 in that they had a longer RNA2, resulting in a 239-amino-acid extension of the C-terminal region of the polyprotein. Sequence analysis suggests that reassortment and recombination occurred among the isolates. Phylogenetic analysis revealed that the Canadian isolates are diverse, grouping in two separate branches along with isolates from Europe and the Americas. More... »

PAGES

1657-1663

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00705-016-2799-6

DOI

http://dx.doi.org/10.1007/s00705-016-2799-6

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1000754987

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/26984225


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35 schema:description In this study, we report the genome sequence of five isolates of strawberry mottle virus (family Secoviridae, order Picornavirales) from strawberry field samples with decline symptoms collected in Eastern Canada. The Canadian isolates differed from the previously characterized European isolate 1134 in that they had a longer RNA2, resulting in a 239-amino-acid extension of the C-terminal region of the polyprotein. Sequence analysis suggests that reassortment and recombination occurred among the isolates. Phylogenetic analysis revealed that the Canadian isolates are diverse, grouping in two separate branches along with isolates from Europe and the Americas.
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