Ontology type: schema:ScholarlyArticle
2016-03
AUTHORSColleen M. Higgins, Nicolas Bejerman, Ming Li, Anthony P. James, Ralf G. Dietzgen, Michael N. Pearson, Peter A. Revill, Robert M. Harding
ABSTRACTWe report the first genome sequence of a Colocasia bobone disease-associated virus (CBDaV) derived from bobone-affected taro [Colocasia esculenta L. Schott] from Solomon Islands. The negative-strand RNA genome is 12,193 nt long, with six major open reading frames (ORFs) with the arrangement 3'-N-P-P3-M-G-L-5'. Typical of all rhabdoviruses, the 3' leader and 5' trailer sequences show complementarity to each other. Phylogenetic analysis indicated that CBDaV is a member of the genus Cytorhabdovirus, supporting previous reports of virus particles within the cytoplasm of bobone-infected taro cells. The availability of the CBDaV genome sequence now makes it possible to assess the role of this virus in bobone, and possibly alomae disease of taro and confirm that this sequence is that of Colocasia bobone disease virus (CBDV). More... »
PAGES745-748
http://scigraph.springernature.com/pub.10.1007/s00705-015-2713-7
DOIhttp://dx.doi.org/10.1007/s00705-015-2713-7
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1008567335
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/26687584
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1108",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical Microbiology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical and Health Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Cluster Analysis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Colocasia",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Gene Order",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genome, Viral",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Melanesia",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Molecular Sequence Data",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Open Reading Frames",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Phylogeny",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Plant Diseases",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "RNA, Viral",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Rhabdoviridae",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sequence Analysis, DNA",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sequence Homology",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Auckland University of Technology",
"id": "https://www.grid.ac/institutes/grid.252547.3",
"name": [
"Institute of Applied Ecology, School of Applied Sciences, Auckland University of Technology, Private Bag 92006, 1142, Auckland, New Zealand",
"AUT Roche Diagnostic Laboratory, Auckland University of Technology, Private Bag 92006, 1142, Auckland, New Zealand"
],
"type": "Organization"
},
"familyName": "Higgins",
"givenName": "Colleen M.",
"id": "sg:person.0675607615.49",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0675607615.49"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Queensland",
"id": "https://www.grid.ac/institutes/grid.1003.2",
"name": [
"Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, 4072, St Lucia, QLD, Australia"
],
"type": "Organization"
},
"familyName": "Bejerman",
"givenName": "Nicolas",
"id": "sg:person.01134251050.21",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01134251050.21"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Auckland University of Technology",
"id": "https://www.grid.ac/institutes/grid.252547.3",
"name": [
"Institute of Applied Ecology, School of Applied Sciences, Auckland University of Technology, Private Bag 92006, 1142, Auckland, New Zealand",
"AUT Roche Diagnostic Laboratory, Auckland University of Technology, Private Bag 92006, 1142, Auckland, New Zealand"
],
"type": "Organization"
},
"familyName": "Li",
"givenName": "Ming",
"id": "sg:person.01337221617.88",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01337221617.88"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Queensland University of Technology",
"id": "https://www.grid.ac/institutes/grid.1024.7",
"name": [
"Centre for Tropical Crops and Biocommodities, Queensland University of Technology, GPO Box 2434, 4001, Brisbane, QLD, Australia"
],
"type": "Organization"
},
"familyName": "James",
"givenName": "Anthony P.",
"id": "sg:person.0613615517.85",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0613615517.85"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Queensland",
"id": "https://www.grid.ac/institutes/grid.1003.2",
"name": [
"Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, 4072, St Lucia, QLD, Australia"
],
"type": "Organization"
},
"familyName": "Dietzgen",
"givenName": "Ralf G.",
"id": "sg:person.01076365043.40",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01076365043.40"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Auckland",
"id": "https://www.grid.ac/institutes/grid.9654.e",
"name": [
"School of Biological Sciences, The University of Auckland, Private Bag 92019, 1142, Auckland, New Zealand"
],
"type": "Organization"
},
"familyName": "Pearson",
"givenName": "Michael N.",
"id": "sg:person.01123354741.48",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01123354741.48"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Victorian Infectious Diseases Reference Laboratory",
"id": "https://www.grid.ac/institutes/grid.433799.3",
"name": [
"Centre for Tropical Crops and Biocommodities, Queensland University of Technology, GPO Box 2434, 4001, Brisbane, QLD, Australia",
"Victorian Infectious Diseases Reference Laboratory, Doherty Institute of Infection and Immunity, 792 Elizabeth St, 3000, Melbourne, VIC, Australia"
],
"type": "Organization"
},
"familyName": "Revill",
"givenName": "Peter A.",
"id": "sg:person.01311327014.51",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01311327014.51"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Queensland University of Technology",
"id": "https://www.grid.ac/institutes/grid.1024.7",
"name": [
"Centre for Tropical Crops and Biocommodities, Queensland University of Technology, GPO Box 2434, 4001, Brisbane, QLD, Australia"
],
"type": "Organization"
},
"familyName": "Harding",
"givenName": "Robert M.",
"id": "sg:person.0712757066.28",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0712757066.28"
],
"type": "Person"
}
],
"citation": [
{
"id": "https://doi.org/10.1093/molbev/mst197",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001444669"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1071/ap05032",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002216312",
"https://doi.org/10.1071/ap05032"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1071/ap05032",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002216312",
"https://doi.org/10.1071/ap05032"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1006/viro.1994.1204",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004234419"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jvi.79.9.5304-5314.2005",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012299679"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt.1883",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015803168",
"https://doi.org/10.1038/nbt.1883"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/vir.0.80591-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019711778"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btp352",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023014918"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.virol.2014.12.042",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027919697"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s007050070096",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037357089",
"https://doi.org/10.1007/s007050070096"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/bts199",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037623568"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btp324",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038266369"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1071/ap99040",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050446295",
"https://doi.org/10.1071/ap99040"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00705-007-1071-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050485106",
"https://doi.org/10.1007/s00705-007-1071-5"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00705-007-1071-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050485106",
"https://doi.org/10.1007/s00705-007-1071-5"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/0022-1317-21-1-145",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060351697"
],
"type": "CreativeWork"
}
],
"datePublished": "2016-03",
"datePublishedReg": "2016-03-01",
"description": "We report the first genome sequence of a Colocasia bobone disease-associated virus (CBDaV) derived from bobone-affected taro [Colocasia esculenta L. Schott] from Solomon Islands. The negative-strand RNA genome is 12,193 nt long, with six major open reading frames (ORFs) with the arrangement 3'-N-P-P3-M-G-L-5'. Typical of all rhabdoviruses, the 3' leader and 5' trailer sequences show complementarity to each other. Phylogenetic analysis indicated that CBDaV is a member of the genus Cytorhabdovirus, supporting previous reports of virus particles within the cytoplasm of bobone-infected taro cells. The availability of the CBDaV genome sequence now makes it possible to assess the role of this virus in bobone, and possibly alomae disease of taro and confirm that this sequence is that of Colocasia bobone disease virus (CBDV). ",
"genre": "research_article",
"id": "sg:pub.10.1007/s00705-015-2713-7",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1083335",
"issn": [
"0304-8608",
"1432-8798"
],
"name": "Archives of Virology",
"type": "Periodical"
},
{
"issueNumber": "3",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "161"
}
],
"name": "Complete genome sequence of Colocasia bobone disease-associated virus, a putative cytorhabdovirus infecting taro",
"pagination": "745-748",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"28d10c9c6ddc14863c675f71bb50c565ec953fe1b40b12c767ded293371cadd0"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"26687584"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"7506870"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s00705-015-2713-7"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1008567335"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s00705-015-2713-7",
"https://app.dimensions.ai/details/publication/pub.1008567335"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T19:56",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8681_00000510.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1007%2Fs00705-015-2713-7"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00705-015-2713-7'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00705-015-2713-7'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00705-015-2713-7'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00705-015-2713-7'
This table displays all metadata directly associated to this object as RDF triples.
231 TRIPLES
21 PREDICATES
56 URIs
34 LITERALS
22 BLANK NODES