Genetic structure and molecular variability of potato virus M populations View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2014-08

AUTHORS

Fatemeh Tabasinejad, Behrooz Jafarpour, Mohammad Zakiaghl, Majid Siampour, Hamid Rouhani, Mohsen Mehrvar

ABSTRACT

To investigate the genetic diversity of potato virus M (PVM; genus Carlavirus, family Betaflexiviridae), the complete nucleotide sequence of the coat protein gene of 30 PVM isolates from a major potato-growing region in Iran were determined. Phylogenetic analysis of these Iranian PVM isolates together with those available in the GenBank database suggested two divergent evolutionary lineages that did not reflect the origin of the isolates, and these were designated as PVM-o and PVM-d. Examination of the genetic variability of the coat protein of Iranian isolates and their counterparts whose sequences are available in the Genbank database revealed 16 genotype groups in the PVM population. Analysis of the synonymous-tononsynonymous ratio showed strong purifying selection in the CP gene in the genotype groups of divergent clades. More... »

PAGES

2081-2090

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00705-014-2037-z

DOI

http://dx.doi.org/10.1007/s00705-014-2037-z

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1034976690

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/24658780


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