Virology Division News: The new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2004-05

AUTHORS

M. J. Adams, J. F. Antoniw, M. Bar-Joseph, A. A. Brunt, T. Candresse, G. D. Foster, G. P. Martelli, R. G. Milne, C. M. Fauquet

ABSTRACT

The new plant virus family Flexiviridae is described. The family is named because its members have flexuous virions and it includes the existing genera Allexivirus, Capillovirus, Carlavirus, Foveavirus, Potexvirus, Trichovirus and Vitivirus, plus the new genus Mandarivirus together with some related viruses not assigned to any genus. The family is justified from phylogenetic analyses of the polymerase and coat protein (CP) sequences. To help to define suitable molecular criteria for demarcation of species, a complete set of pairwise comparisons was made using the nucleotide (nt) and amino acid (aa) sequences of each fully-sequenced gene from every available accession in the family. Based on the distributions and on inspection of the data, it was concluded that, as a general rule, distinct species have less than ca. 72% identical nt or 80% identical aa between their entire CP or replication protein genes. More... »

PAGES

1045-1060

References to SciGraph publications

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00705-004-0304-0

DOI

http://dx.doi.org/10.1007/s00705-004-0304-0

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1043812721

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/15098118


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