Ontology type: schema:ScholarlyArticle
2003-03
AUTHORSA. Roy, P. Ramachandran, R. H. Brlansky
ABSTRACTCitrus tristeza virus (CTV) is an aphid-transmitted closterovirus, which causes one of the most important citrus diseases worldwide. Isolates of CTV differ widely in their biological properties. CTV-infected samples were collected from four locations in India: Bangalore (CTV-B), Delhi (CTV-D), Nagpur (CTV-N), and Pune (CTV-P), and were maintained by grafting into Kagzi lime ( Citrus aurantifolia (Christm. Swing.). All isolates produced typical vein clearing and flecking symptoms 6-8 weeks after grafting. In addition, CTV-B and CTV-P isolates produced stem-pitting symptoms after 8-10 months. The CTV coat protein gene (CPG) was amplified by RT-PCR using CPG specific primers, yielding an amplicon of 672 bp for all the isolates. Sequence analysis of the CPG amplicon of all the four Indian isolates showed 93-94% nucleotide sequence homology to the Californian CTV severe stem pitting isolate SY568 and 92-93% homology to the Japanese seedling yellows isolate NUagA and Israeli VT p346 isolates. In phylogenetic tree analysis, Indian CTV isolates appeared far different from other isolates as they formed a separate branch. Comparison among the Indian isolates was carried out by restriction analysis and restriction fragment length polymorphism (RFLP). Specific primers to various genome segments of well-characterized CTV isolates were used to further classify the Indian CTV isolates. More... »
PAGES707-722
http://scigraph.springernature.com/pub.10.1007/s00705-002-0947-7
DOIhttp://dx.doi.org/10.1007/s00705-002-0947-7
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1046623003
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/12664295
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1108",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical Microbiology",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical and Health Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Amino Acid Sequence",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Base Sequence",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Capsid Proteins",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Citrus aurantiifolia",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Closterovirus",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "DNA Primers",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genes, Viral",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "India",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Molecular Sequence Data",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Plant Diseases",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Polymorphism, Restriction Fragment Length",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Restriction Mapping",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Reverse Transcriptase Polymerase Chain Reaction",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Sequence Alignment",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Virulence",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Indian Agricultural Research Institute",
"id": "https://www.grid.ac/institutes/grid.418196.3",
"name": [
"Advanced Center for Plant Virology, Division of Plant Pathology, Indian Agricultural Research Institute, New Delhi, India, IN"
],
"type": "Organization"
},
"familyName": "Roy",
"givenName": "A.",
"id": "sg:person.01000032337.55",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01000032337.55"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Indian Agricultural Research Institute",
"id": "https://www.grid.ac/institutes/grid.418196.3",
"name": [
"Advanced Center for Plant Virology, Division of Plant Pathology, Indian Agricultural Research Institute, New Delhi, India, IN"
],
"type": "Organization"
},
"familyName": "Ramachandran",
"givenName": "P.",
"id": "sg:person.01046651664.96",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01046651664.96"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "University of Florida",
"id": "https://www.grid.ac/institutes/grid.15276.37",
"name": [
"University of Florida, IFAS, Citrus Research and Education Center, Lake Alfred, Florida, U.S.A., US"
],
"type": "Organization"
},
"familyName": "Brlansky",
"givenName": "R. H.",
"id": "sg:person.01100417520.99",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01100417520.99"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/bf01702586",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008932873",
"https://doi.org/10.1007/bf01702586"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf01702586",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008932873",
"https://doi.org/10.1007/bf01702586"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf01702586",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1008932873",
"https://doi.org/10.1007/bf01702586"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0166-0934(93)90065-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010274973"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0166-0934(93)90065-y",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010274973"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.90.8.3641",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039832142"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/0003-2697(83)90281-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041230611"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/25.24.4876",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041279110"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0065-3527(08)60569-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1051757416"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/phyto-80-224",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060108804"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/phyto-86-974",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060110241"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/0022-1317-34-3-475",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060352456"
],
"type": "CreativeWork"
}
],
"datePublished": "2003-03",
"datePublishedReg": "2003-03-01",
"description": "Citrus tristeza virus (CTV) is an aphid-transmitted closterovirus, which causes one of the most important citrus diseases worldwide. Isolates of CTV differ widely in their biological properties. CTV-infected samples were collected from four locations in India: Bangalore (CTV-B), Delhi (CTV-D), Nagpur (CTV-N), and Pune (CTV-P), and were maintained by grafting into Kagzi lime ( Citrus aurantifolia (Christm. Swing.). All isolates produced typical vein clearing and flecking symptoms 6-8 weeks after grafting. In addition, CTV-B and CTV-P isolates produced stem-pitting symptoms after 8-10 months. The CTV coat protein gene (CPG) was amplified by RT-PCR using CPG specific primers, yielding an amplicon of 672 bp for all the isolates. Sequence analysis of the CPG amplicon of all the four Indian isolates showed 93-94% nucleotide sequence homology to the Californian CTV severe stem pitting isolate SY568 and 92-93% homology to the Japanese seedling yellows isolate NUagA and Israeli VT p346 isolates. In phylogenetic tree analysis, Indian CTV isolates appeared far different from other isolates as they formed a separate branch. Comparison among the Indian isolates was carried out by restriction analysis and restriction fragment length polymorphism (RFLP). Specific primers to various genome segments of well-characterized CTV isolates were used to further classify the Indian CTV isolates.",
"genre": "research_article",
"id": "sg:pub.10.1007/s00705-002-0947-7",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1083335",
"issn": [
"0304-8608",
"1432-8798"
],
"name": "Archives of Virology",
"type": "Periodical"
},
{
"issueNumber": "4",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "148"
}
],
"name": "Grouping and comparison of Indian citrus tristeza virus isolates based on coat protein gene sequences and restriction analysis patterns",
"pagination": "707-722",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"de18001652efb0dd24ca058c428cf87c99b748ee63e0499f423d987cc3fdd9dd"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"12664295"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"7506870"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s00705-002-0947-7"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1046623003"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s00705-002-0947-7",
"https://app.dimensions.ai/details/publication/pub.1046623003"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-11T00:17",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8695_00000515.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1007%2Fs00705-002-0947-7"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00705-002-0947-7'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00705-002-0947-7'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00705-002-0947-7'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00705-002-0947-7'
This table displays all metadata directly associated to this object as RDF triples.
174 TRIPLES
21 PREDICATES
53 URIs
36 LITERALS
24 BLANK NODES