Ontology type: schema:ScholarlyArticle
2006-07
AUTHORSOsamu Takata, Yutaka J. Kawamura, Fumio Konishi, Junichi Sasaki, Toshihiro Kai, Yasuyuki Miyakura, Hideo Nagai, Toshihiko Tsukamoto
ABSTRACTPurposeDistant metastasis is a significant prognostic factor of colon carcinoma. Adjuvant chemotherapy has been shown to decrease its recurrence. However, there are no definitive methods for the diagnosis of hepatic recurrence after potentially curative surgery. The aim of this study was to evaluate the accuracy of mRNA expression profiling using samples obtained from primary tumors to predict hepatic recurrence.MethodsPatients with stage III colorectal carcinoma without any recurrence for at least 5 years (group A: n = 9) and patients with stage IV carcinoma with hepatic metastasis (group B: n = 10) were included in this study. Tissue samples were collected from the primary tumor and adjacent normal colonic mucosa at the time of surgery in each patient. Total RNA was extracted and the mRNA expression profile was examined using a cDNA macroarray.ResultsA hierarchical clustering analysis revealed a dendrogram in which the patients were divided into two clusters. One cluster consisted of seven patients in group A and two in group B. The other consisted of two patients in group A and eight in group B. Therefore, the positive and negative predictive value of hierarchical clustering analysis for hepatic metastasis was 80.0% and 78.8%, respectively. Fifteen genes were revealed to be upregulated and 12 were downregulated in group B. The upregulated genes included CCNA2, TP53, and MDM2, while the downregulated genes included CDH1, GADD45A, and BCL2L2.ConclusionsmRNA expression profiling by a cDNA array analysis of specimens obtained from primary tumors was found to be useful for distinguishing patients with and without hepatic metastasis. This method is expected to contribute to the identification of patients at high risk for hepatic recurrence, while also helping in the administration of intensive adjuvant chemotherapy for such high risk patients. More... »
PAGES608-614
http://scigraph.springernature.com/pub.10.1007/s00595-006-3210-0
DOIhttp://dx.doi.org/10.1007/s00595-006-3210-0
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1009978915
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/16794795
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/11",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Medical and Health Sciences",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/1112",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Oncology and Carcinogenesis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Aged",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Colorectal Neoplasms",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Down-Regulation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Female",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Humans",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Liver Neoplasms",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Male",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Middle Aged",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Oligonucleotide Array Sequence Analysis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Prognosis",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "RNA, Messenger",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Up-Regulation",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"alternateName": "Department of Surgery, Omiya Medical Center, Jichi Medical School, 1-847 Amanuma, Omiya-ku, 330-8503, Saitama, Japan",
"id": "http://www.grid.ac/institutes/grid.415020.2",
"name": [
"Department of Surgery, Omiya Medical Center, Jichi Medical School, 1-847 Amanuma, Omiya-ku, 330-8503, Saitama, Japan"
],
"type": "Organization"
},
"familyName": "Takata",
"givenName": "Osamu",
"id": "sg:person.01255456716.16",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01255456716.16"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Surgery, Omiya Medical Center, Jichi Medical School, 1-847 Amanuma, Omiya-ku, 330-8503, Saitama, Japan",
"id": "http://www.grid.ac/institutes/grid.415020.2",
"name": [
"Department of Surgery, Omiya Medical Center, Jichi Medical School, 1-847 Amanuma, Omiya-ku, 330-8503, Saitama, Japan"
],
"type": "Organization"
},
"familyName": "Kawamura",
"givenName": "Yutaka J.",
"id": "sg:person.013137255677.13",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.013137255677.13"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Surgery, Omiya Medical Center, Jichi Medical School, 1-847 Amanuma, Omiya-ku, 330-8503, Saitama, Japan",
"id": "http://www.grid.ac/institutes/grid.415020.2",
"name": [
"Department of Surgery, Omiya Medical Center, Jichi Medical School, 1-847 Amanuma, Omiya-ku, 330-8503, Saitama, Japan"
],
"type": "Organization"
},
"familyName": "Konishi",
"givenName": "Fumio",
"id": "sg:person.01272216415.22",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01272216415.22"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Surgery, Omiya Medical Center, Jichi Medical School, 1-847 Amanuma, Omiya-ku, 330-8503, Saitama, Japan",
"id": "http://www.grid.ac/institutes/grid.415020.2",
"name": [
"Department of Surgery, Omiya Medical Center, Jichi Medical School, 1-847 Amanuma, Omiya-ku, 330-8503, Saitama, Japan"
],
"type": "Organization"
},
"familyName": "Sasaki",
"givenName": "Junichi",
"id": "sg:person.014130430661.38",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014130430661.38"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Surgery, Omiya Medical Center, Jichi Medical School, 1-847 Amanuma, Omiya-ku, 330-8503, Saitama, Japan",
"id": "http://www.grid.ac/institutes/grid.415020.2",
"name": [
"Department of Surgery, Omiya Medical Center, Jichi Medical School, 1-847 Amanuma, Omiya-ku, 330-8503, Saitama, Japan"
],
"type": "Organization"
},
"familyName": "Kai",
"givenName": "Toshihiro",
"id": "sg:person.012705452161.45",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.012705452161.45"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Surgery, Jichi Medical School, Saitama, Japan",
"id": "http://www.grid.ac/institutes/grid.410804.9",
"name": [
"Department of Surgery, Jichi Medical School, Saitama, Japan"
],
"type": "Organization"
},
"familyName": "Miyakura",
"givenName": "Yasuyuki",
"id": "sg:person.0622112261.03",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.0622112261.03"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Department of Surgery, Jichi Medical School, Saitama, Japan",
"id": "http://www.grid.ac/institutes/grid.410804.9",
"name": [
"Department of Surgery, Jichi Medical School, Saitama, Japan"
],
"type": "Organization"
},
"familyName": "Nagai",
"givenName": "Hideo",
"id": "sg:person.07606732212.45",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.07606732212.45"
],
"type": "Person"
},
{
"familyName": "Tsukamoto",
"givenName": "Toshihiko",
"id": "sg:person.015473014351.84",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.015473014351.84"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/bf03326421",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045333111",
"https://doi.org/10.1007/bf03326421"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng731",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1020306535",
"https://doi.org/10.1038/ng731"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/sj.bjc.6601237",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002798081",
"https://doi.org/10.1038/sj.bjc.6601237"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/ng1060",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038400003",
"https://doi.org/10.1038/ng1060"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s005350200015",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1044358823",
"https://doi.org/10.1007/s005350200015"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/bjc.1995.119",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012288422",
"https://doi.org/10.1038/bjc.1995.119"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/sj.bjc.6601310",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038366467",
"https://doi.org/10.1038/sj.bjc.6601310"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00384-001-0370-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024280445",
"https://doi.org/10.1007/s00384-001-0370-7"
],
"type": "CreativeWork"
}
],
"datePublished": "2006-07",
"datePublishedReg": "2006-07-01",
"description": "PurposeDistant metastasis is a significant prognostic factor of colon carcinoma. Adjuvant chemotherapy has been shown to decrease its recurrence. However, there are no definitive methods for the diagnosis of hepatic recurrence after potentially curative surgery. The aim of this study was to evaluate the accuracy of mRNA expression profiling using samples obtained from primary tumors to predict hepatic recurrence.MethodsPatients with stage III colorectal carcinoma without any recurrence for at least 5 years (group A: n = 9) and patients with stage IV carcinoma with hepatic metastasis (group B: n = 10) were included in this study. Tissue samples were collected from the primary tumor and adjacent normal colonic mucosa at the time of surgery in each patient. Total RNA was extracted and the mRNA expression profile was examined using a cDNA macroarray.ResultsA hierarchical clustering analysis revealed a dendrogram in which the patients were divided into two clusters. One cluster consisted of seven patients in group A and two in group B. The other consisted of two patients in group A and eight in group B. Therefore, the positive and negative predictive value of hierarchical clustering analysis for hepatic metastasis was 80.0% and 78.8%, respectively. Fifteen genes were revealed to be upregulated and 12 were downregulated in group B. The upregulated genes included CCNA2, TP53, and MDM2, while the downregulated genes included CDH1, GADD45A, and BCL2L2.ConclusionsmRNA expression profiling by a cDNA array analysis of specimens obtained from primary tumors was found to be useful for distinguishing patients with and without hepatic metastasis. This method is expected to contribute to the identification of patients at high risk for hepatic recurrence, while also helping in the administration of intensive adjuvant chemotherapy for such high risk patients.",
"genre": "article",
"id": "sg:pub.10.1007/s00595-006-3210-0",
"inLanguage": "en",
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1102161",
"issn": [
"0941-1291",
"1436-2813"
],
"name": "Surgery Today",
"publisher": "Springer Nature",
"type": "Periodical"
},
{
"issueNumber": "7",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "36"
}
],
"keywords": [
"hepatic metastases",
"hepatic recurrence",
"primary tumor",
"adjuvant chemotherapy",
"colorectal carcinoma",
"group B.",
"group A",
"cDNA array analysis",
"such high-risk patients",
"adjacent normal colonic mucosa",
"stage III colorectal carcinoma",
"intensive adjuvant chemotherapy",
"significant prognostic factors",
"high-risk patients",
"time of surgery",
"stage IV carcinoma",
"identification of patients",
"normal colonic mucosa",
"negative predictive value",
"group B. Therefore",
"array analysis",
"PurposeDistant metastasis",
"curative surgery",
"risk patients",
"prognostic factors",
"colonic mucosa",
"high risk",
"patients",
"predictive value",
"recurrence",
"metastasis",
"carcinoma",
"colon carcinoma",
"tumors",
"tissue samples",
"mRNA expression profiles",
"chemotherapy",
"surgery",
"mRNA expression profiling",
"total RNA",
"upregulated genes",
"definitive method",
"expression profiling",
"expression profiles",
"MethodsPatients",
"B.",
"mucosa",
"cDNA macroarray",
"diagnosis",
"administration",
"genes",
"TP53",
"ResultsA",
"CCNA2",
"risk",
"study",
"MDM2",
"hierarchical clustering analysis",
"CDH1",
"Gadd45a",
"aim",
"expression",
"years",
"RNA",
"samples",
"factors",
"analysis",
"specimens",
"profiling",
"Therefore",
"profile",
"macroarray",
"identification",
"time",
"method",
"clustering analysis",
"values",
"clusters",
"accuracy",
"prediction",
"dendrogram"
],
"name": "cDNA Array Analysis for Prediction of Hepatic Metastasis of Colorectal Carcinoma",
"pagination": "608-614",
"productId": [
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1009978915"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s00595-006-3210-0"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"16794795"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s00595-006-3210-0",
"https://app.dimensions.ai/details/publication/pub.1009978915"
],
"sdDataset": "articles",
"sdDatePublished": "2022-05-20T07:23",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-springernature-scigraph/baseset/20220519/entities/gbq_results/article/article_414.jsonl",
"type": "ScholarlyArticle",
"url": "https://doi.org/10.1007/s00595-006-3210-0"
}
]
Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00595-006-3210-0'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00595-006-3210-0'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00595-006-3210-0'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00595-006-3210-0'
This table displays all metadata directly associated to this object as RDF triples.
274 TRIPLES
22 PREDICATES
128 URIs
112 LITERALS
19 BLANK NODES