Ontology type: schema:ScholarlyArticle
2018-08
AUTHORSStefan Schwab, Leonardo Araujo Terra, José Ivo Baldani
ABSTRACTNitrospirillum amazonense is a nitrogen-fixing bacterium that shows potential to promote plant growth when inoculated into sugarcane and rice plants. This microorganism has been the subject of biochemical and genetic characterization to elucidate important functions related to host plant interaction and growth promotion, including the determination of draft genome sequences of two strains, Y2 and CBAmC, the second of which is the aim of the present study. CBAmC has been isolated from sugarcane (Saccharum spp.), and is currently used in a sugarcane consortium inoculant with four other nitrogen-fixing bacterial strains. The present paper describes a significant improvement in the genome sequence and assembly for the N. amazonense strain CBAmC, and determination for the first time of a complete genome sequence for this bacterial species, using PacBio technology. The analysis of the genomic data obtained allowed the discovery of genes coding for metabolic pathways and cellular structures that may be determinant for the success of the bacterial establishment and colonization into the host sugarcane plant, besides conferring important characteristics to the inoculant. These include genes for the use of sucrose and N-glycans, biosynthesis of autoinducer molecules, siderophore production and acquisition, auxin and polyamine biosynthesis, flagellum, σ-fimbriae, a variety of secretion systems, and a complete denitrification system. Concerning genes for nitrogenase and auxiliary proteins, it was possible to corroborate literature data that in N. amazonense these probably had originated from horizontal gene transfer, from bacteria of the Rhizobiales order. The complete genomic sequence of the CBAmC strain of N. amazonense revealed that the bacterium harbors four replicons, including three chromosomes and one chromid, a profile that coincides with that of other two strains, according to literature data, suggesting that as a replicon pattern for the species. Finally, results of phylogenomic analyses in this work support the recent reclassification of the species, separating it from the Azospirillum genus. More importantly, results of the present work shall guide subsequent studies on strain CBAmC as well as the development of a sugarcane inoculant. More... »
PAGES997-1016
http://scigraph.springernature.com/pub.10.1007/s00438-018-1439-0
DOIhttp://dx.doi.org/10.1007/s00438-018-1439-0
DIMENSIONShttps://app.dimensions.ai/details/publication/pub.1103635678
PUBMEDhttps://www.ncbi.nlm.nih.gov/pubmed/29696375
JSON-LD is the canonical representation for SciGraph data.
TIP: You can open this SciGraph record using an external JSON-LD service: JSON-LD Playground Google SDTT
[
{
"@context": "https://springernature.github.io/scigraph/jsonld/sgcontext.json",
"about": [
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/0604",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Genetics",
"type": "DefinedTerm"
},
{
"id": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/06",
"inDefinedTermSet": "http://purl.org/au-research/vocabulary/anzsrc-for/2008/",
"name": "Biological Sciences",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Genome, Bacterial",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Nitrogen Fixation",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Plant Stems",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Rhodospirillaceae",
"type": "DefinedTerm"
},
{
"inDefinedTermSet": "https://www.nlm.nih.gov/mesh/",
"name": "Saccharum",
"type": "DefinedTerm"
}
],
"author": [
{
"affiliation": {
"name": [
"Instituto Nacional de Ci\u00eancia e Tecnologia da Fixa\u00e7\u00e3o Biol\u00f3gica de Nitrog\u00eanio, CNPq, Curitiba, Brazil",
"Embrapa Agrobiologia, Rodovia BR 465, km 7, 23891-000, Serop\u00e9dica, RJ, Brazil"
],
"type": "Organization"
},
"familyName": "Schwab",
"givenName": "Stefan",
"id": "sg:person.01330407633.25",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.01330407633.25"
],
"type": "Person"
},
{
"affiliation": {
"alternateName": "Universidade Federal Rural do Rio de Janeiro",
"id": "https://www.grid.ac/institutes/grid.412391.c",
"name": [
"Instituto Nacional de Ci\u00eancia e Tecnologia da Fixa\u00e7\u00e3o Biol\u00f3gica de Nitrog\u00eanio, CNPq, Curitiba, Brazil",
"Embrapa Agrobiologia, Rodovia BR 465, km 7, 23891-000, Serop\u00e9dica, RJ, Brazil",
"Pr\u00f3-Reitoria de Pesquisa e P\u00f3s-Gradua\u00e7\u00e3o, Universidade Federal Rural do Rio de Janeiro, Rodovia BR 465, km 7, 23890-000, Serop\u00e9dica, RJ, Brazil"
],
"type": "Organization"
},
"familyName": "Terra",
"givenName": "Leonardo Araujo",
"type": "Person"
},
{
"affiliation": {
"name": [
"Instituto Nacional de Ci\u00eancia e Tecnologia da Fixa\u00e7\u00e3o Biol\u00f3gica de Nitrog\u00eanio, CNPq, Curitiba, Brazil",
"Embrapa Agrobiologia, Rodovia BR 465, km 7, 23891-000, Serop\u00e9dica, RJ, Brazil"
],
"type": "Organization"
},
"familyName": "Baldani",
"givenName": "Jos\u00e9 Ivo",
"id": "sg:person.014360631331.76",
"sameAs": [
"https://app.dimensions.ai/discover/publication?and_facet_researcher=ur.014360631331.76"
],
"type": "Person"
}
],
"citation": [
{
"id": "sg:pub.10.1007/s11103-016-0457-8",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1000667834",
"https://doi.org/10.1007/s11103-016-0457-8"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/molbev/mst197",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001444669"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11104-007-9476-1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001777164",
"https://doi.org/10.1007/s11104-007-9476-1"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.ppat.1002923",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1001971465"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pgen.1002430",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002277219"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btv681",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002278529"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aem.03454-15",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002573916"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/978-3-642-30197-1_300",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1002855028",
"https://doi.org/10.1007/978-3-642-30197-1_300"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/bth324",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003183624"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.5897/ajar2016.11141",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1003476426"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/1462-2920.13569",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1004131752"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/mmbr.00014-07",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005848986"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1155/2015/898592",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1005908074"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/bioinformatics/btr703",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007155475"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jb.182.14.4113-4116.2000",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1007887226"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11104-006-0025-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010121667",
"https://doi.org/10.1007/s11104-006-0025-0"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1472-765x.2003.01373.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010683908"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/dnares/dsp026",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010995772"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/dnares/dsp026",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1010995772"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-2958.2003.03510.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1011158609"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.202358699",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012666762"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1590/s0100-204x2015000100004",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1012785432"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/1462-2920.13215",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013330979"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-9-75",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013431920",
"https://doi.org/10.1186/1471-2164-9-75"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-10-450",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013449585",
"https://doi.org/10.1186/1471-2164-10-450"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0022-2836(05)80360-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1013618994"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/molbev/msp259",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014546516"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/ijs.0.054171-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1014675679"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jb.184.11.3086-3095.2002",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1015426092"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-14-60",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016754105",
"https://doi.org/10.1186/1471-2105-14-60"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2105-14-60",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1016754105",
"https://doi.org/10.1186/1471-2105-14-60"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.tim.2010.02.003",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017585128"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrmicro2762",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1017691906",
"https://doi.org/10.1038/nrmicro2762"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.bbamcr.2004.05.001",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018132763"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.3389/fpls.2013.00120",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018138210"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1105/tpc.114.126763",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1018230211"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.103.026583",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1019274675"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1074/jbc.m114.624593",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1021861175"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/gb-2004-5-2-r12",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022585853",
"https://doi.org/10.1186/gb-2004-5-2-r12"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1590/s0100-204x2016000900059",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1022593858"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pgen.1002064",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023529427"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/1462-2920.12075",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023842258"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.ejsobi.2008.08.003",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1023843230"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1590/01000683rbcs20151144",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1024231045"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2180-10-37",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1027375903",
"https://doi.org/10.1186/1471-2180-10-37"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1590/s1806-66902013000200020",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1028255186"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.92.3.714",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1029947996"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.tim.2009.12.010",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030632424"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aem.71.9.4951-4959.2005",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030892588"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/1751-7915.12177",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1030926038"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s10482-014-0176-6",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031005848",
"https://doi.org/10.1007/s10482-014-0176-6"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2180-12-98",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1031960666",
"https://doi.org/10.1186/1471-2180-12-98"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11104-011-0812-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032713905",
"https://doi.org/10.1007/s11104-011-0812-0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s11104-011-0812-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032713905",
"https://doi.org/10.1007/s11104-011-0812-0"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/bf00428851",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1032924887",
"https://doi.org/10.1007/bf00428851"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/aem.01489-14",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1033398816"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/mbio.01527-14",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036306138"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00253-007-0909-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036544909",
"https://doi.org/10.1007/s00253-007-0909-9"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00253-007-0909-9",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1036544909",
"https://doi.org/10.1007/s00253-007-0909-9"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jb.186.15.5031-5039.2004",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037125117"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1023/a:1016249704336",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037242276",
"https://doi.org/10.1023/a:1016249704336"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkm360",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1037970477"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1590/s0001-37652005000300014",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1038358647"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1590/s0100-06832014000200005",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039468203"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00344-013-9362-4",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1039805803",
"https://doi.org/10.1007/s00344-013-9362-4"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrmicro954",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040135339",
"https://doi.org/10.1038/nrmicro954"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrmicro954",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040135339",
"https://doi.org/10.1038/nrmicro954"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1134/s1021443706050025",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040198966",
"https://doi.org/10.1134/s1021443706050025"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0004358",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1040232222"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1101/gr.2289704",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041222434"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt1243",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041725317",
"https://doi.org/10.1038/nbt1243"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nbt1243",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1041725317",
"https://doi.org/10.1038/nbt1243"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/j.syapm.2015.03.007",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1042522680"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nrmicro3456",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1043059122",
"https://doi.org/10.1038/nrmicro3456"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/pce.12220",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045224578"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1038/nprot.2012.068",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045464370",
"https://doi.org/10.1038/nprot.2012.068"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.262672599",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1045481519"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1186/1471-2164-12-409",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1046365891",
"https://doi.org/10.1186/1471-2164-12-409"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/j.1365-2958.2012.08014.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048344080"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1590/s0100-204x2012000200015",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1048555183"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1046/j.1365-2672.2003.02047.x",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1049164300"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1073/pnas.0906412106",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1050756122"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1371/journal.pone.0000224",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052925858"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1016/s0065-2911(03)47004-5",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052948439"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00203-010-0672-7",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1052962808",
"https://doi.org/10.1007/s00203-010-0672-7"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1104/pp.111.180604",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053077441"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1111/1758-2229.12502",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1053166222"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/mpmi-05-11-0138",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060077601"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/mpmi-18-0856",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060078274"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/mpmi-18-0891",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060078277"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1094/mpmi.2004.17.10.1153",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060080751"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/00207713-46-3-802",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060349365"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/00207713-51-1-157",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060350414"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/00221287-139-9-2261",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060368889"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/ijs.0.02879-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060384060"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/ijsem.0.000740",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060388762"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1099/mic.0.052332-0",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1060395198"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jb.165.3.864-870.1986",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062714781"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/jb.171.9.4679-4685.1989",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062718184"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1128/microbe.9.111.1",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1062730743"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.4172/2157-7471.1000168",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1072331368"
],
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1074503896",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1077156791",
"type": "CreativeWork"
},
{
"id": "https://app.dimensions.ai/details/publication/pub.1083390063",
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/oxfordjournals.pcp.a077574",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1083493137"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00203-017-1357-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084504528",
"https://doi.org/10.1007/s00203-017-1357-2"
],
"type": "CreativeWork"
},
{
"id": "sg:pub.10.1007/s00203-017-1357-2",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1084504528",
"https://doi.org/10.1007/s00203-017-1357-2"
],
"type": "CreativeWork"
},
{
"id": "https://doi.org/10.1093/nar/gkx343",
"sameAs": [
"https://app.dimensions.ai/details/publication/pub.1085312354"
],
"type": "CreativeWork"
}
],
"datePublished": "2018-08",
"datePublishedReg": "2018-08-01",
"description": "Nitrospirillum amazonense is a nitrogen-fixing bacterium that shows potential to promote plant growth when inoculated into sugarcane and rice plants. This microorganism has been the subject of biochemical and genetic characterization to elucidate important functions related to host plant interaction and growth promotion, including the determination of draft genome sequences of two strains, Y2 and CBAmC, the second of which is the aim of the present study. CBAmC has been isolated from sugarcane (Saccharum spp.), and is currently used in a sugarcane consortium inoculant with four other nitrogen-fixing bacterial strains. The present paper describes a significant improvement in the genome sequence and assembly for the N. amazonense strain CBAmC, and determination for the first time of a complete genome sequence for this bacterial species, using PacBio technology. The analysis of the genomic data obtained allowed the discovery of genes coding for metabolic pathways and cellular structures that may be determinant for the success of the bacterial establishment and colonization into the host sugarcane plant, besides conferring important characteristics to the inoculant. These include genes for the use of sucrose and N-glycans, biosynthesis of autoinducer molecules, siderophore production and acquisition, auxin and polyamine biosynthesis, flagellum, \u03c3-fimbriae, a variety of secretion systems, and a complete denitrification system. Concerning genes for nitrogenase and auxiliary proteins, it was possible to corroborate literature data that in N. amazonense these probably had originated from horizontal gene transfer, from bacteria of the Rhizobiales order. The complete genomic sequence of the CBAmC strain of N. amazonense revealed that the bacterium harbors four replicons, including three chromosomes and one chromid, a profile that coincides with that of other two strains, according to literature data, suggesting that as a replicon pattern for the species. Finally, results of phylogenomic analyses in this work support the recent reclassification of the species, separating it from the Azospirillum genus. More importantly, results of the present work shall guide subsequent studies on strain CBAmC as well as the development of a sugarcane inoculant.",
"genre": "research_article",
"id": "sg:pub.10.1007/s00438-018-1439-0",
"inLanguage": [
"en"
],
"isAccessibleForFree": false,
"isPartOf": [
{
"id": "sg:journal.1297380",
"issn": [
"1617-4615",
"1432-1874"
],
"name": "Molecular Genetics and Genomics",
"type": "Periodical"
},
{
"issueNumber": "4",
"type": "PublicationIssue"
},
{
"type": "PublicationVolume",
"volumeNumber": "293"
}
],
"name": "Genomic characterization of Nitrospirillum amazonense strain CBAmC, a nitrogen-fixing bacterium isolated from surface-sterilized sugarcane stems",
"pagination": "997-1016",
"productId": [
{
"name": "readcube_id",
"type": "PropertyValue",
"value": [
"522b4ab079d1ab8c221894532b11c0c302d2a63f9875336502aab694185a22b1"
]
},
{
"name": "pubmed_id",
"type": "PropertyValue",
"value": [
"29696375"
]
},
{
"name": "nlm_unique_id",
"type": "PropertyValue",
"value": [
"101093320"
]
},
{
"name": "doi",
"type": "PropertyValue",
"value": [
"10.1007/s00438-018-1439-0"
]
},
{
"name": "dimensions_id",
"type": "PropertyValue",
"value": [
"pub.1103635678"
]
}
],
"sameAs": [
"https://doi.org/10.1007/s00438-018-1439-0",
"https://app.dimensions.ai/details/publication/pub.1103635678"
],
"sdDataset": "articles",
"sdDatePublished": "2019-04-10T17:36",
"sdLicense": "https://scigraph.springernature.com/explorer/license/",
"sdPublisher": {
"name": "Springer Nature - SN SciGraph project",
"type": "Organization"
},
"sdSource": "s3://com-uberresearch-data-dimensions-target-20181106-alternative/cleanup/v134/2549eaecd7973599484d7c17b260dba0a4ecb94b/merge/v9/a6c9fde33151104705d4d7ff012ea9563521a3ce/jats-lookup/v90/0000000001_0000000264/records_8672_00000535.jsonl",
"type": "ScholarlyArticle",
"url": "http://link.springer.com/10.1007%2Fs00438-018-1439-0"
}
]Download the RDF metadata as: json-ld nt turtle xml License info
JSON-LD is a popular format for linked data which is fully compatible with JSON.
curl -H 'Accept: application/ld+json' 'https://scigraph.springernature.com/pub.10.1007/s00438-018-1439-0'
N-Triples is a line-based linked data format ideal for batch operations.
curl -H 'Accept: application/n-triples' 'https://scigraph.springernature.com/pub.10.1007/s00438-018-1439-0'
Turtle is a human-readable linked data format.
curl -H 'Accept: text/turtle' 'https://scigraph.springernature.com/pub.10.1007/s00438-018-1439-0'
RDF/XML is a standard XML format for linked data.
curl -H 'Accept: application/rdf+xml' 'https://scigraph.springernature.com/pub.10.1007/s00438-018-1439-0'
This table displays all metadata directly associated to this object as RDF triples.
435 TRIPLES
21 PREDICATES
135 URIs
26 LITERALS
14 BLANK NODES