The genome sequence of ‘Kurodagosun’, a major carrot variety in Japan and China, reveals insights into biological research and carrot ... View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2018-03-01

AUTHORS

Feng Wang, Guang-Long Wang, Xi-Lin Hou, Meng-Yao Li, Zhi-Sheng Xu, Ai-Sheng Xiong

ABSTRACT

Carrot (Daucus carota L.) is one of the most economically important root vegetables in the world, providing numerous nutrients for human health. China is the largest country of carrot production in the world, and ‘Kurodagosun’ has been a major carrot variety in China. Carrot material used in this study was the inbred line ‘DC-27’, which was derived by forced selfing from ‘Kurodagosun’. To understand the genetic system and plant-specific genes of ‘Kurodagosun’, we report the draft genome sequence of carrot ‘DC-27’ assembled using a combination of Roche454 and HiSeq 2000 sequencing technologies to achieve 32-fold genome coverage. A total of 31,891 predicted genes were identified. These assembled sequences provide candidate genes involved in biological processes including stress response and carotenoid biosynthesis. Genomic sequences corresponding to 371.6 Mb was less than 473 Mb, which is the estimated genome size. The availability of a draft sequence of the ‘DC-27’ genome advances knowledge on the biological research and breeding of carrot, as well as other Apiaceae plants. The ‘DC-27’ genome sequence data also provide a new resource to explore the evolution of other higher plants. More... »

PAGES

861-871

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00438-018-1428-3

DOI

http://dx.doi.org/10.1007/s00438-018-1428-3

DIMENSIONS

https://app.dimensions.ai/details/publication/pub.1101293712

PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/29497811


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46 schema:description Carrot (Daucus carota L.) is one of the most economically important root vegetables in the world, providing numerous nutrients for human health. China is the largest country of carrot production in the world, and ‘Kurodagosun’ has been a major carrot variety in China. Carrot material used in this study was the inbred line ‘DC-27’, which was derived by forced selfing from ‘Kurodagosun’. To understand the genetic system and plant-specific genes of ‘Kurodagosun’, we report the draft genome sequence of carrot ‘DC-27’ assembled using a combination of Roche454 and HiSeq 2000 sequencing technologies to achieve 32-fold genome coverage. A total of 31,891 predicted genes were identified. These assembled sequences provide candidate genes involved in biological processes including stress response and carotenoid biosynthesis. Genomic sequences corresponding to 371.6 Mb was less than 473 Mb, which is the estimated genome size. The availability of a draft sequence of the ‘DC-27’ genome advances knowledge on the biological research and breeding of carrot, as well as other Apiaceae plants. The ‘DC-27’ genome sequence data also provide a new resource to explore the evolution of other higher plants.
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54 China
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57 MB
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59 biological processes
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61 biosynthesis
62 breeding
63 candidate genes
64 carotenoid biosynthesis
65 carrot
66 carrot breeding
67 carrot material
68 carrot production
69 carrot varieties
70 combination
71 countries
72 coverage
73 data
74 draft genome sequence
75 draft sequence
76 estimated genome size
77 evolution
78 genes
79 genetic system
80 genome
81 genome coverage
82 genome sequence
83 genome sequence data
84 genome size
85 genomic sequences
86 health
87 higher plants
88 human health
89 important root vegetable
90 insights
91 knowledge
92 largest country
93 lines
94 materials
95 new resources
96 numerous nutrients
97 nutrients
98 plant-specific genes
99 plants
100 process
101 production
102 research
103 resources
104 response
105 root vegetables
106 sequence
107 sequence data
108 sequencing technologies
109 size
110 stress response
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112 system
113 technology
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115 variety
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