Genome-wide identification and comparative analysis of grafting-responsive mRNA in watermelon grafted onto bottle gourd and squash rootstocks by high-throughput sequencing View Full Text


Ontology type: schema:ScholarlyArticle     


Article Info

DATE

2015-10-26

AUTHORS

Na Liu, Jinghua Yang, Xinxing Fu, Li Zhang, Kai Tang, Kateta Malangisha Guy, Zhongyuan Hu, Shaogui Guo, Yong Xu, Mingfang Zhang

ABSTRACT

Grafting is an important agricultural technique widely used to improve plant growth, yield, and adaptation to either biotic or abiotic stresses. However, the molecular mechanisms underlying grafting-induced physiological processes remain unclear. Watermelon (Citrullus lanatus L.) is an important horticultural crop worldwide. Grafting technique is commonly used in watermelon production for improving its tolerance to stresses, especially to the soil-borne fusarium wilt disease. In the present study, we used high-throughput sequencing to perform a genome-wide transcript analysis of scions from watermelon grafted onto bottle gourd and squash rootstocks. Our transcriptome and digital gene expression (DGE) profiling data provided insights into the molecular aspects of gene regulation in grafted watermelon. Compared with self-grafted watermelon, there were 787 and 3485 genes differentially expressed in watermelon grafted onto bottle gourd and squash rootstocks, respectively. These genes were associated with primary and secondary metabolism, hormone signaling, transcription factors, transporters, and response to stimuli. Grafting led to changes in expression of these genes, suggesting that they may play important roles in mediating the physiological processes of grafted seedlings. The potential roles of the grafting-responsive mRNAs in diverse biological and metabolic processes were discussed. Obviously, the data obtained in this study provide an excellent resource for unraveling the mechanisms of candidate genes function in diverse biological processes and in environmental adaptation in a graft system. More... »

PAGES

621-633

Identifiers

URI

http://scigraph.springernature.com/pub.10.1007/s00438-015-1132-5

DOI

http://dx.doi.org/10.1007/s00438-015-1132-5

DIMENSIONS

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PUBMED

https://www.ncbi.nlm.nih.gov/pubmed/26500104


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30 schema:description Grafting is an important agricultural technique widely used to improve plant growth, yield, and adaptation to either biotic or abiotic stresses. However, the molecular mechanisms underlying grafting-induced physiological processes remain unclear. Watermelon (Citrullus lanatus L.) is an important horticultural crop worldwide. Grafting technique is commonly used in watermelon production for improving its tolerance to stresses, especially to the soil-borne fusarium wilt disease. In the present study, we used high-throughput sequencing to perform a genome-wide transcript analysis of scions from watermelon grafted onto bottle gourd and squash rootstocks. Our transcriptome and digital gene expression (DGE) profiling data provided insights into the molecular aspects of gene regulation in grafted watermelon. Compared with self-grafted watermelon, there were 787 and 3485 genes differentially expressed in watermelon grafted onto bottle gourd and squash rootstocks, respectively. These genes were associated with primary and secondary metabolism, hormone signaling, transcription factors, transporters, and response to stimuli. Grafting led to changes in expression of these genes, suggesting that they may play important roles in mediating the physiological processes of grafted seedlings. The potential roles of the grafting-responsive mRNAs in diverse biological and metabolic processes were discussed. Obviously, the data obtained in this study provide an excellent resource for unraveling the mechanisms of candidate genes function in diverse biological processes and in environmental adaptation in a graft system.
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37 schema:keywords Fusarium wilt disease
38 Genome-wide identification
39 abiotic stresses
40 adaptation
41 agricultural techniques
42 analysis
43 aspects
44 biological processes
45 bottle gourd
46 candidate genes
47 changes
48 comparative analysis
49 crops
50 data
51 digital gene expression
52 disease
53 diverse biological processes
54 environmental adaptation
55 excellent resource
56 expression
57 factors
58 gene expression
59 gene regulation
60 genes
61 genome-wide transcript analysis
62 gourd
63 graft system
64 grafting-induced physiological processes
65 grafting-responsive mRNAs
66 growth
67 high-throughput sequencing
68 hormone signaling
69 horticultural crops
70 identification
71 important agricultural technique
72 important horticultural crop
73 important role
74 insights
75 mRNA
76 mechanism
77 metabolic processes
78 metabolism
79 molecular aspects
80 molecular mechanisms
81 physiological processes
82 plant growth
83 potential role
84 present study
85 process
86 production
87 regulation
88 resources
89 response
90 role
91 rootstocks
92 scions
93 secondary metabolism
94 seedlings
95 self-grafted watermelon
96 sequencing
97 signaling
98 soil-borne fusarium wilt disease
99 stimuli
100 stress
101 study
102 system
103 technique
104 tolerance
105 transcript analysis
106 transcription factors
107 transcriptome
108 transporters
109 watermelon
110 watermelon production
111 wilt disease
112 yield
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